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LINC01315 (long intergenic non-protein coding RNA 1315)

Identity

Alias_symbol (synonym)lnc-C22orf32-1
Other alias
HGNC (Hugo) LINC01315
LocusID (NCBI) 102723775
Atlas_Id 65930
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42364400 and ends at 42369208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01315   50513
Cards
Entrez_Gene (NCBI)LINC01315  102723775  long intergenic non-protein coding RNA 1315
Aliaseslnc-C22orf32-1
GeneCards (Weizmann)LINC01315
Ensembl hg19 (Hinxton)ENSG00000229891 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229891 [Gene_View]  chr22:42364400-42369208 [Contig_View]  LINC01315 [Vega]
ICGC DataPortalENSG00000229891
TCGA cBioPortalLINC01315
AceView (NCBI)LINC01315
Genatlas (Paris)LINC01315
WikiGenes102723775
SOURCE (Princeton)LINC01315
Genetics Home Reference (NIH)LINC01315
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01315  -     chr22:42364400-42369208 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01315  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01315 - 22q13.2 [CytoView hg19]  LINC01315 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBILINC01315 [Mapview hg19]  LINC01315 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI914073 AV709904 BC038245 CB050274
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01315
Cluster EST : UnigeneHs.335413 [ NCBI ]
CGAP (NCI)Hs.335413
Alternative Splicing GalleryENSG00000229891
Gene ExpressionLINC01315 [ NCBI-GEO ]   LINC01315 [ EBI - ARRAY_EXPRESS ]   LINC01315 [ SEEK ]   LINC01315 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01315 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723775
GTEX Portal (Tissue expression)LINC01315
Human Protein AtlasENSG00000229891-LINC01315 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01315
DMDM Disease mutations102723775
Blocks (Seattle)LINC01315
Human Protein Atlas [tissue]ENSG00000229891-LINC01315 [tissue]
Protein Interaction databases
FunCoupENSG00000229891
BioGRIDLINC01315
STRING (EMBL)LINC01315
ZODIACLINC01315
Ontologies - Pathways
Huge Navigator LINC01315 [HugePedia]
snp3D : Map Gene to Disease102723775
BioCentury BCIQLINC01315
ClinGenLINC01315
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723775
Clinical trialLINC01315
Miscellaneous
canSAR (ICR)LINC01315 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01315
EVEXLINC01315
GoPubMedLINC01315
iHOPLINC01315
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:03 CET 2017

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