Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01327 (long intergenic non-protein coding RNA 1327)

Identity

Alias_symbol (synonym)TCONS_00005644
Other alias
HGNC (Hugo) LINC01327
LocusID (NCBI) 104310350
Atlas_Id 77635
Location 3q26.1  [Link to chromosome band 3q26]
Location_base_pair Starts at 167392796 and ends at 167408519 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01327   50533
Cards
Entrez_Gene (NCBI)LINC01327  104310350  long intergenic non-protein coding RNA 1327
AliasesTCONS_00005644
GeneCards (Weizmann)LINC01327
Ensembl hg19 (Hinxton)ENSG00000241669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241669 [Gene_View]  chr3:167392796-167408519 [Contig_View]  LINC01327 [Vega]
ICGC DataPortalENSG00000241669
TCGA cBioPortalLINC01327
AceView (NCBI)LINC01327
Genatlas (Paris)LINC01327
WikiGenes104310350
SOURCE (Princeton)LINC01327
Genetics Home Reference (NIH)LINC01327
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01327  -     chr3:167392796-167408519 +  3q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01327  -     3q26.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01327 - 3q26.1 [CytoView hg19]  LINC01327 - 3q26.1 [CytoView hg38]
Mapping of homologs : NCBILINC01327 [Mapview hg19]  LINC01327 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF059162
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01327
Cluster EST : UnigeneHs.581631 [ NCBI ]
CGAP (NCI)Hs.581631
Alternative Splicing GalleryENSG00000241669
Gene ExpressionLINC01327 [ NCBI-GEO ]   LINC01327 [ EBI - ARRAY_EXPRESS ]   LINC01327 [ SEEK ]   LINC01327 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01327 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104310350
GTEX Portal (Tissue expression)LINC01327
Human Protein AtlasENSG00000241669-LINC01327 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01327
DMDM Disease mutations104310350
Blocks (Seattle)LINC01327
Human Protein Atlas [tissue]ENSG00000241669-LINC01327 [tissue]
Protein Interaction databases
FunCoupENSG00000241669
BioGRIDLINC01327
STRING (EMBL)LINC01327
ZODIACLINC01327
Ontologies - Pathways
Huge Navigator LINC01327 [HugePedia]
snp3D : Map Gene to Disease104310350
BioCentury BCIQLINC01327
ClinGenLINC01327
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104310350
Clinical trialLINC01327
Miscellaneous
canSAR (ICR)LINC01327 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01327
EVEXLINC01327
GoPubMedLINC01327
iHOPLINC01327
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:58 CET 2017

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