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LINC01335 (long intergenic non-protein coding RNA 1335)

Identity

Other alias-
HGNC (Hugo) LINC01335
LocusID (NCBI) 102503429
Atlas_Id 65934
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 74306410 and ends at 74308325 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01335   50542
Cards
Entrez_Gene (NCBI)LINC01335  102503429  long intergenic non-protein coding RNA 1335
Aliases
GeneCards (Weizmann)LINC01335
Ensembl hg19 (Hinxton)ENSG00000248942 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248942 [Gene_View]  chr5:74306410-74308325 [Contig_View]  LINC01335 [Vega]
ICGC DataPortalENSG00000248942
TCGA cBioPortalLINC01335
AceView (NCBI)LINC01335
Genatlas (Paris)LINC01335
WikiGenes102503429
SOURCE (Princeton)LINC01335
Genetics Home Reference (NIH)LINC01335
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01335  -     chr5:74306410-74308325 -  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01335  -     5q13.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01335 - 5q13.3 [CytoView hg19]  LINC01335 - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBILINC01335 [Mapview hg19]  LINC01335 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI018361
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01335
Cluster EST : UnigeneHs.519391 [ NCBI ]
CGAP (NCI)Hs.519391
Alternative Splicing GalleryENSG00000248942
Gene ExpressionLINC01335 [ NCBI-GEO ]   LINC01335 [ EBI - ARRAY_EXPRESS ]   LINC01335 [ SEEK ]   LINC01335 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01335 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102503429
GTEX Portal (Tissue expression)LINC01335
Human Protein AtlasENSG00000248942-LINC01335 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01335
DMDM Disease mutations102503429
Blocks (Seattle)LINC01335
Human Protein Atlas [tissue]ENSG00000248942-LINC01335 [tissue]
Protein Interaction databases
FunCoupENSG00000248942
BioGRIDLINC01335
STRING (EMBL)LINC01335
ZODIACLINC01335
Ontologies - Pathways
Huge Navigator LINC01335 [HugePedia]
snp3D : Map Gene to Disease102503429
BioCentury BCIQLINC01335
ClinGenLINC01335
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102503429
Clinical trialLINC01335
Miscellaneous
canSAR (ICR)LINC01335 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01335
EVEXLINC01335
GoPubMedLINC01335
iHOPLINC01335
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:38:49 CET 2017

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