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LINC01336 (long intergenic non-protein coding RNA 1336)

Identity

Other alias-
HGNC (Hugo) LINC01336
LocusID (NCBI) 104326191
Atlas_Id 77645
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 75047719 and ends at 75052643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01336   50543
Cards
Entrez_Gene (NCBI)LINC01336  104326191  long intergenic non-protein coding RNA 1336
Aliases
GeneCards (Weizmann)LINC01336
Ensembl hg19 (Hinxton)ENSG00000250889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250889 [Gene_View]  chr5:75047719-75052643 [Contig_View]  LINC01336 [Vega]
ICGC DataPortalENSG00000250889
TCGA cBioPortalLINC01336
AceView (NCBI)LINC01336
Genatlas (Paris)LINC01336
WikiGenes104326191
SOURCE (Princeton)LINC01336
Genetics Home Reference (NIH)LINC01336
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01336  -     chr5:75047719-75052643 -  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01336  -     5q13.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01336 - 5q13.3 [CytoView hg19]  LINC01336 - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBILINC01336 [Mapview hg19]  LINC01336 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG900784 DB344036
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01336
Cluster EST : UnigeneHs.582288 [ NCBI ]
CGAP (NCI)Hs.582288
Alternative Splicing GalleryENSG00000250889
Gene ExpressionLINC01336 [ NCBI-GEO ]   LINC01336 [ EBI - ARRAY_EXPRESS ]   LINC01336 [ SEEK ]   LINC01336 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01336 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104326191
GTEX Portal (Tissue expression)LINC01336
Human Protein AtlasENSG00000250889-LINC01336 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01336
DMDM Disease mutations104326191
Blocks (Seattle)LINC01336
Human Protein Atlas [tissue]ENSG00000250889-LINC01336 [tissue]
Protein Interaction databases
FunCoupENSG00000250889
BioGRIDLINC01336
STRING (EMBL)LINC01336
ZODIACLINC01336
Ontologies - Pathways
Huge Navigator LINC01336 [HugePedia]
snp3D : Map Gene to Disease104326191
BioCentury BCIQLINC01336
ClinGenLINC01336
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104326191
Clinical trialLINC01336
Miscellaneous
canSAR (ICR)LINC01336 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01336
EVEXLINC01336
GoRubMee<'A>LINC01336
iHOPLINC01336
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:54 CET 2017

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