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LINC01338 (long intergenic non-protein coding RNA 1338)

Identity

Other alias-
HGNC (Hugo) LINC01338
LocusID (NCBI) 102546175
Atlas_Id 65936
Location 5q14.2  [Link to chromosome band 5q14]
Location_base_pair Starts at 82850865 and ends at 82859836 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01338   50547
Cards
Entrez_Gene (NCBI)LINC01338  102546175  long intergenic non-protein coding RNA 1338
Aliases
GeneCards (Weizmann)LINC01338
Ensembl hg19 (Hinxton)ENSG00000281327 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281327 [Gene_View]  chr5:82850865-82859836 [Contig_View]  LINC01338 [Vega]
ICGC DataPortalENSG00000281327
TCGA cBioPortalLINC01338
AceView (NCBI)LINC01338
Genatlas (Paris)LINC01338
WikiGenes102546175
SOURCE (Princeton)LINC01338
Genetics Home Reference (NIH)LINC01338
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01338  -     chr5:82850865-82859836 -  5q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01338  -     5q14.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01338 - 5q14.2 [CytoView hg19]  LINC01338 - 5q14.2 [CytoView hg38]
Mapping of homologs : NCBILINC01338 [Mapview hg19]  LINC01338 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX488485
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01338
Alternative Splicing GalleryENSG00000281327
Gene ExpressionLINC01338 [ NCBI-GEO ]   LINC01338 [ EBI - ARRAY_EXPRESS ]   LINC01338 [ SEEK ]   LINC01338 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01338 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102546175
GTEX Portal (Tissue expression)LINC01338
Human Protein AtlasENSG00000281327-LINC01338 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01338
DMDM Disease mutations102546175
Blocks (Seattle)LINC01338
Human Protein Atlas [tissue]ENSG00000281327-LINC01338 [tissue]
Protein Interaction databases
FunCoupENSG00000281327
BioGRIDLINC01338
STRING (EMBL)LINC01338
ZODIACLINC01338
Ontologies - Pathways
Huge Navigator LINC01338 [HugePedia]
snp3D : Map Gene to Disease102546175
BioCentury BCIQLINC01338
ClinGenLINC01338
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102546175
Clinical trialLINC01338
Miscellaneous
canSAR (ICR)LINC01338 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01338
EVEXLINC01338
GoPubMedLINC01338
iHOPLINC01338
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:55 CET 2017

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