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LINC01340 (long intergenic non-protein coding RNA 1340)

Identity

Other alias-
HGNC (Hugo) LINC01340
LocusID (NCBI) 102546227
Atlas_Id 65938
Location 5q15  [Link to chromosome band 5q15]
Location_base_pair Starts at 96840400 and ends at 97006755 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01340   50550
Cards
Entrez_Gene (NCBI)LINC01340  102546227  long intergenic non-protein coding RNA 1340
Aliases
GeneCards (Weizmann)LINC01340
Ensembl hg19 (Hinxton)ENSG00000250331 [Gene_View]  chr5:96840400-97006755 [Contig_View]  LINC01340 [Vega]
Ensembl hg38 (Hinxton)ENSG00000250331 [Gene_View]  chr5:96840400-97006755 [Contig_View]  LINC01340 [Vega]
ICGC DataPortalENSG00000250331
TCGA cBioPortalLINC01340
AceView (NCBI)LINC01340
Genatlas (Paris)LINC01340
WikiGenes102546227
SOURCE (Princeton)LINC01340
Genetics Home Reference (NIH)LINC01340
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01340  -     chr5:96840400-97006755 +  5q15   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01340  -     5q15   [Description]    (hg38-Dec_2013)
EnsemblLINC01340 - 5q15 [CytoView hg19]  LINC01340 - 5q15 [CytoView hg38]
Mapping of homologs : NCBILINC01340 [Mapview hg19]  LINC01340 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ432570 HG498272
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)LINC01340
Cluster EST : UnigeneHs.582516 [ NCBI ]
CGAP (NCI)Hs.582516
Alternative Splicing GalleryENSG00000250331
Gene ExpressionLINC01340 [ NCBI-GEO ]   LINC01340 [ EBI - ARRAY_EXPRESS ]   LINC01340 [ SEEK ]   LINC01340 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01340 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102546227
GTEX Portal (Tissue expression)LINC01340
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01340
DMDM Disease mutations102546227
Blocks (Seattle)LINC01340
Human Protein AtlasENSG00000250331
Protein Interaction databases
FunCoupENSG00000250331
BioGRIDLINC01340
STRING (EMBL)LINC01340
ZODIACLINC01340
Ontologies - Pathways
Huge Navigator LINC01340 [HugePedia]
snp3D : Map Gene to Disease102546227
BioCentury BCIQLINC01340
ClinGenLINC01340
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102546227
Clinical trialLINC01340
Miscellaneous
canSAR (ICR)LINC01340 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01340
EVEXLINC01340
GoPubMedLINC01340
iHOPLINC01340
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:13:42 CET 2017

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