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LINC01343 (long intergenic non-protein coding RNA 1343)

Identity

Other alias-
HGNC (Hugo) LINC01343
LocusID (NCBI) 339442
Atlas_Id 65941
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 38209034 and ends at 38214767 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01343   50553
Cards
Entrez_Gene (NCBI)LINC01343  339442  long intergenic non-protein coding RNA 1343
Aliases
GeneCards (Weizmann)LINC01343
Ensembl hg19 (Hinxton)ENSG00000237290 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237290 [Gene_View]  chr1:38209034-38214767 [Contig_View]  LINC01343 [Vega]
ICGC DataPortalENSG00000237290
TCGA cBioPortalLINC01343
AceView (NCBI)LINC01343
Genatlas (Paris)LINC01343
WikiGenes339442
SOURCE (Princeton)LINC01343
Genetics Home Reference (NIH)LINC01343
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01343  -     chr1:38209034-38214767 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01343  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01343 - 1p34.3 [CytoView hg19]  LINC01343 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBILINC01343 [Mapview hg19]  LINC01343 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042675 BI827914
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01343
Cluster EST : UnigeneHs.434245 [ NCBI ]
CGAP (NCI)Hs.434245
Alternative Splicing GalleryENSG00000237290
Gene ExpressionLINC01343 [ NCBI-GEO ]   LINC01343 [ EBI - ARRAY_EXPRESS ]   LINC01343 [ SEEK ]   LINC01343 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01343 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)339442
GTEX Portal (Tissue expression)LINC01343
Human Protein AtlasENSG00000237290-LINC01343 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01343
DMDM Disease mutations339442
Blocks (Seattle)LINC01343
Human Protein Atlas [tissue]ENSG00000237290-LINC01343 [tissue]
Protein Interaction databases
FunCoupENSG00000237290
BioGRIDLINC01343
STRING (EMBL)LINC01343
ZODIACLINC01343
Ontologies - Pathways
Huge Navigator LINC01343 [HugePedia]
snp3D : Map Gene to Disease339442
BioCentury BCIQLINC01343
ClinGenLINC01343
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339442
Clinical trialLINC01343
Miscellaneous
canSAR (ICR)LINC01343 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01343
EVEXLINC01343
GoPubMedLINC01343
iHOPLINC01343
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:06 CET 2017

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