Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01345 (long intergenic non-protein coding RNA 1345)

Identity

Other alias-
HGNC (Hugo) LINC01345
LocusID (NCBI) 105376672
Atlas_Id 79550
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 3947149 and ends at 3948980 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01345   50564
Cards
Entrez_Gene (NCBI)LINC01345  105376672  long intergenic non-protein coding RNA 1345
Aliases
GeneCards (Weizmann)LINC01345
Ensembl hg19 (Hinxton)ENSG00000226374 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226374 [Gene_View]  chr1:3947149-3948980 [Contig_View]  LINC01345 [Vega]
ICGC DataPortalENSG00000226374
TCGA cBioPortalLINC01345
AceView (NCBI)LINC01345
Genatlas (Paris)LINC01345
WikiGenes105376672
SOURCE (Princeton)LINC01345
Genetics Home Reference (NIH)LINC01345
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01345  -     chr1:3947149-3948980 -  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01345  -     1p36.32   [Description]    (hg19-Feb_2009)
EnsemblLINC01345 - 1p36.32 [CytoView hg19]  LINC01345 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBILINC01345 [Mapview hg19]  LINC01345 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI093840 AI184536 BX095399
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01345
Cluster EST : UnigeneHs.435087 [ NCBI ]
CGAP (NCI)Hs.435087
Alternative Splicing GalleryENSG00000226374
Gene ExpressionLINC01345 [ NCBI-GEO ]   LINC01345 [ EBI - ARRAY_EXPRESS ]   LINC01345 [ SEEK ]   LINC01345 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01345 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105376672
GTEX Portal (Tissue expression)LINC01345
Human Protein AtlasENSG00000226374-LINC01345 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01345
DMDM Disease mutations105376672
Blocks (Seattle)LINC01345
Human Protein Atlas [tissue]ENSG00000226374-LINC01345 [tissue]
Protein Interaction databases
FunCoupENSG00000226374
BioGRIDLINC01345
STRING (EMBL)LINC01345
ZODIACLINC01345
Ontologies - Pathways
Huge Navigator LINC01345 [HugePedia]
snp3D : Map Gene to Disease105376672
BioCentury BCIQLINC01345
ClinGenLINC01345
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105376672
Clinical trialLINC01345
Miscellaneous
canSAR (ICR)LINC01345 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01345
EVEXLINC01345
GoPubMedLINC01345
iHOPLINC01345
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:00:55 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.