Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01356 (long intergenic non-protein coding RNA 1356)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC01356
LocusID (NCBI) 100996702
Atlas_Id 65952
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 112820169 and ends at 112850643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC01356   50587
Cards
Entrez_Gene (NCBI)LINC01356    long intergenic non-protein coding RNA 1356
Aliases
GeneCards (Weizmann)LINC01356
Ensembl hg19 (Hinxton)ENSG00000215866 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215866 [Gene_View]  ENSG00000215866 [Sequence]  chr1:112820169-112850643 [Contig_View]  LINC01356 [Vega]
ICGC DataPortalENSG00000215866
TCGA cBioPortalLINC01356
AceView (NCBI)LINC01356
Genatlas (Paris)LINC01356
SOURCE (Princeton)LINC01356
Genetics Home Reference (NIH)LINC01356
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01356  -     chr1:112820169-112850643 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01356  -     1p13.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC01356 - 1p13.2 [CytoView hg19]  LINC01356 - 1p13.2 [CytoView hg38]
ImmunoBaseENSG00000215866
genome Data Viewer NCBILINC01356 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093435 BC019891 BC028023
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01356
Alternative Splicing GalleryENSG00000215866
Gene ExpressionLINC01356 [ NCBI-GEO ]   LINC01356 [ EBI - ARRAY_EXPRESS ]   LINC01356 [ SEEK ]   LINC01356 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01356 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01356 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996702
GTEX Portal (Tissue expression)LINC01356
Human Protein AtlasENSG00000215866-LINC01356 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9X3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9X3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9X3
Splice isoforms : SwissVarQ8N9X3
PhosPhoSitePlusQ8N9X3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01356
Blocks (Seattle)LINC01356
SuperfamilyQ8N9X3
Human Protein Atlas [tissue]ENSG00000215866-LINC01356 [tissue]
Peptide AtlasQ8N9X3
Protein Interaction databases
DIP (DOE-UCLA)Q8N9X3
IntAct (EBI)Q8N9X3
BioGRIDLINC01356
STRING (EMBL)LINC01356
ZODIACLINC01356
Ontologies - Pathways
QuickGOQ8N9X3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01356
Atlas of Cancer Signalling NetworkLINC01356
Wikipedia pathwaysLINC01356
Orthology - Evolution
OrthoDB100996702
GeneTree (enSembl)ENSG00000215866
Phylogenetic Trees/Animal Genes : TreeFamLINC01356
HOGENOMQ8N9X3
Homologs : HomoloGeneLINC01356
Homology/Alignments : Family Browser (UCSC)LINC01356
Gene fusions - Rearrangements
Fusion : QuiverLINC01356
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01356 [hg38]
dbVarLINC01356
ClinVarLINC01356
MonarchLINC01356
1000_GenomesLINC01356 
Exome Variant ServerLINC01356
GNOMAD BrowserENSG00000215866
Varsome BrowserLINC01356
Genomic Variants (DGV)LINC01356 [DGVbeta]
DECIPHERLINC01356 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01356 
Mutations
ICGC Data PortalLINC01356 
TCGA Data PortalLINC01356 
Broad Tumor PortalLINC01356
OASIS PortalLINC01356 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01356
BioMutasearch LINC01356
DgiDB (Drug Gene Interaction Database)LINC01356
DoCM (Curated mutations)LINC01356 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01356 (select a term)
intoGenLINC01356
Cancer3DLINC01356(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01356
MedgenLINC01356
Genetic Testing Registry LINC01356
NextProtQ8N9X3 [Medical]
GENETestsLINC01356
Target ValidationLINC01356
Huge Navigator LINC01356 [HugePedia]
ClinGenLINC01356
Clinical trials, drugs, therapy
MyCancerGenomeLINC01356
Protein Interactions : CTD
Clinical trialLINC01356
Miscellaneous
canSAR (ICR)LINC01356 (select the gene name)
HarmonizomeLINC01356
DataMed IndexLINC01356
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01356
EVEXLINC01356
GoPubMedLINC01356
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:02:11 CET 2020

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