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LINC01387 (long intergenic non-protein coding RNA 1387)

Identity

Alias_namesC18orf64
chromosome 18 open reading frame 64
Other alias
HGNC (Hugo) LINC01387
LocusID (NCBI) 100130480
Atlas_Id 78039
Location 18p11.31  [Link to chromosome band 18p11]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01387   44660
Cards
Entrez_Gene (NCBI)LINC01387  100130480  long intergenic non-protein coding RNA 1387
AliasesC18orf64
GeneCards (Weizmann)LINC01387
Ensembl hg19 (Hinxton)ENSG00000265944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265944 [Gene_View]  - [Contig_View]  LINC01387 [Vega]
ICGC DataPortalENSG00000265944
TCGA cBioPortalLINC01387
AceView (NCBI)LINC01387
Genatlas (Paris)LINC01387
WikiGenes100130480
SOURCE (Princeton)LINC01387
Genetics Home Reference (NIH)LINC01387
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01387  -  
GoldenPath hg19 (UCSC)LINC01387  -  
EnsemblLINC01387 - [CytoView hg19]  LINC01387 - [CytoView hg38]
Mapping of homologs : NCBILINC01387 [Mapview hg19]  LINC01387 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DT218598
RefSeq transcript (Entrez)NM_001243517
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01387
Cluster EST : UnigeneHs.646267 [ NCBI ]
CGAP (NCI)Hs.646267
Alternative Splicing GalleryENSG00000265944
Gene ExpressionLINC01387 [ NCBI-GEO ]   LINC01387 [ EBI - ARRAY_EXPRESS ]   LINC01387 [ SEEK ]   LINC01387 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01387 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130480
GTEX Portal (Tissue expression)LINC01387
Human Protein AtlasENSG00000265944-LINC01387 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtJ3KSC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtJ3KSC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProJ3KSC0
Splice isoforms : SwissVarJ3KSC0
PhosPhoSitePlusJ3KSC0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01387
DMDM Disease mutations100130480
Blocks (Seattle)LINC01387
SuperfamilyJ3KSC0
Human Protein Atlas [tissue]ENSG00000265944-LINC01387 [tissue]
Peptide AtlasJ3KSC0
Protein Interaction databases
DIP (DOE-UCLA)J3KSC0
IntAct (EBI)J3KSC0
FunCoupENSG00000265944
BioGRIDLINC01387
STRING (EMBL)LINC01387
ZODIACLINC01387
Ontologies - Pathways
QuickGOJ3KSC0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01387
Atlas of Cancer Signalling NetworkLINC01387
Wikipedia pathwaysLINC01387
Orthology - Evolution
OrthoDB100130480
GeneTree (enSembl)ENSG00000265944
Phylogenetic Trees/Animal Genes : TreeFamLINC01387
HOVERGENJ3KSC0
HOGENOMJ3KSC0
Homologs : HomoloGeneLINC01387
Homology/Alignments : Family Browser (UCSC)LINC01387
Gene fusions - Rearrangements
Tumor Fusion PortalLINC01387
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01387 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01387
dbVarLINC01387
ClinVarLINC01387
1000_GenomesLINC01387 
Exome Variant ServerLINC01387
ExAC (Exome Aggregation Consortium)ENSG00000265944
GNOMAD BrowserENSG00000265944
Genetic variants : HAPMAP100130480
Genomic Variants (DGV)LINC01387 [DGVbeta]
DECIPHERLINC01387 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01387 
Mutations
ICGC Data PortalLINC01387 
TCGA Data PortalLINC01387 
Broad Tumor PortalLINC01387
OASIS PortalLINC01387 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01387
BioMutasearch LINC01387
DgiDB (Drug Gene Interaction Database)LINC01387
DoCM (Curated mutations)LINC01387 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01387 (select a term)
intoGenLINC01387
Cancer3DLINC01387(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01387
MedgenLINC01387
Genetic Testing Registry LINC01387
NextProtJ3KSC0 [Medical]
TSGene100130480
GENETestsLINC01387
Target ValidationLINC01387
Huge Navigator LINC01387 [HugePedia]
snp3D : Map Gene to Disease100130480
BioCentury BCIQLINC01387
ClinGenLINC01387
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130480
Clinical trialLINC01387
Miscellaneous
canSAR (ICR)LINC01387 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01387
EVEXLINC01387
GoPubMedLINC01387
iHOPLINC01387
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:37:35 CET 2017

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