Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01397 (long intergenic non-protein coding RNA 1397)

Identity

Other alias-
HGNC (Hugo) LINC01397
LocusID (NCBI) 104355139
Atlas_Id 76618
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 110082688 and ends at 110109719 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01397   50677
Cards
Entrez_Gene (NCBI)LINC01397  104355139  long intergenic non-protein coding RNA 1397
Aliases
GeneCards (Weizmann)LINC01397
Ensembl hg19 (Hinxton)ENSG00000258673 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258673 [Gene_View]  chr1:110082688-110109719 [Contig_View]  LINC01397 [Vega]
ICGC DataPortalENSG00000258673
TCGA cBioPortalLINC01397
AceView (NCBI)LINC01397
Genatlas (Paris)LINC01397
WikiGenes104355139
SOURCE (Princeton)LINC01397
Genetics Home Reference (NIH)LINC01397
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01397  -     chr1:110082688-110109719 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01397  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01397 - 1p13.3 [CytoView hg19]  LINC01397 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBILINC01397 [Mapview hg19]  LINC01397 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA779101
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01397
Cluster EST : UnigeneHs.628193 [ NCBI ]
CGAP (NCI)Hs.628193
Alternative Splicing GalleryENSG00000258673
Gene ExpressionLINC01397 [ NCBI-GEO ]   LINC01397 [ EBI - ARRAY_EXPRESS ]   LINC01397 [ SEEK ]   LINC01397 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01397 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104355139
GTEX Portal (Tissue expression)LINC01397
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01397
DMDM Disease mutations104355139
Blocks (Seattle)LINC01397
Human Protein AtlasENSG00000258673
Protein Interaction databases
FunCoupENSG00000258673
BioGRIDLINC01397
STRING (EMBL)LINC01397
ZODIACLINC01397
Ontologies - Pathways
Huge Navigator LINC01397 [HugePedia]
snp3D : Map Gene to Disease104355139
BioCentury BCIQLINC01397
ClinGenLINC01397
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104355139
Clinical trialLINC01397
Miscellaneous
canSAR (ICR)LINC01397 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01397
EVEXLINC01397
GoPubMedLINC01397
iHOPLINC01397
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:58:56 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.