Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01398 (long intergenic non-protein coding RNA 1398)


Alias (NCBI)-
HGNC (Hugo) LINC01398
LocusID (NCBI) 101929651
Atlas_Id 65973
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 46446673 and ends at 46449704 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01398   50678
Entrez_Gene (NCBI)LINC01398    long intergenic non-protein coding RNA 1398
GeneCards (Weizmann)LINC01398
Ensembl hg19 (Hinxton)ENSG00000224863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224863 [Gene_View]  ENSG00000224863 [Sequence]  chr1:46446673-46449704 [Contig_View]  LINC01398 [Vega]
ICGC DataPortalENSG00000224863
TCGA cBioPortalLINC01398
AceView (NCBI)LINC01398
Genatlas (Paris)LINC01398
SOURCE (Princeton)LINC01398
Genetics Home Reference (NIH)LINC01398
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01398  -     chr1:46446673-46449704 -  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01398  -     1p33   [Description]    (hg19-Feb_2009)
GoldenPathLINC01398 - 1p33 [CytoView hg19]  LINC01398 - 1p33 [CytoView hg38]
Genome Data Viewer NCBILINC01398 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC021746
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01398
Gene ExpressionLINC01398 [ NCBI-GEO ]   LINC01398 [ EBI - ARRAY_EXPRESS ]   LINC01398 [ SEEK ]   LINC01398 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01398 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01398 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101929651
GTEX Portal (Tissue expression)LINC01398
Human Protein AtlasENSG00000224863-LINC01398 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01398
Human Protein Atlas [tissue]ENSG00000224863-LINC01398 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:57:47 CEST 2021

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