Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01402 (long intergenic non-protein coding RNA 1402)


Alias (NCBI)GS1-421I3.4
HGNC (Hugo) LINC01402
HGNC Alias symbTCONS_00017087
LocusID (NCBI) 104797536
Atlas_Id 77215
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120117642 and ends at 120119700 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01402   50685
Entrez_Gene (NCBI)LINC01402    long intergenic non-protein coding RNA 1402
AliasesGS1-421I3.4; TCONS_00017087
GeneCards (Weizmann)LINC01402
Ensembl hg19 (Hinxton)ENSG00000228139 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228139 [Gene_View]  ENSG00000228139 [Sequence]  chrX:120117642-120119700 [Contig_View]  LINC01402 [Vega]
ICGC DataPortalENSG00000228139
TCGA cBioPortalLINC01402
AceView (NCBI)LINC01402
Genatlas (Paris)LINC01402
SOURCE (Princeton)LINC01402
Genetics Home Reference (NIH)LINC01402
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01402  -     chrX:120117642-120119700 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01402  -     Xq24   [Description]    (hg19-Feb_2009)
GoldenPathLINC01402 - Xq24 [CytoView hg19]  LINC01402 - Xq24 [CytoView hg38]
Genome Data Viewer NCBILINC01402 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA360663
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01402
Gene ExpressionLINC01402 [ NCBI-GEO ]   LINC01402 [ EBI - ARRAY_EXPRESS ]   LINC01402 [ SEEK ]   LINC01402 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01402 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01402 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)104797536
GTEX Portal (Tissue expression)LINC01402
Human Protein AtlasENSG00000228139-LINC01402 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01402
Human Protein Atlas [tissue]ENSG00000228139-LINC01402 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:57:48 CEST 2021

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