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LINC01402 (long intergenic non-protein coding RNA 1402)

Identity

Alias (NCBI)GS1-421I3.4
TCONS_00017087
HGNC (Hugo) LINC01402
HGNC Alias symbTCONS_00017087
LocusID (NCBI) 104797536
Atlas_Id 77215
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120117642 and ends at 120119700 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC01402   50685
Cards
Entrez_Gene (NCBI)LINC01402    long intergenic non-protein coding RNA 1402
AliasesGS1-421I3.4; TCONS_00017087
GeneCards (Weizmann)LINC01402
Ensembl hg19 (Hinxton)ENSG00000228139 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228139 [Gene_View]  ENSG00000228139 [Sequence]  chrX:120117642-120119700 [Contig_View]  LINC01402 [Vega]
ICGC DataPortalENSG00000228139
TCGA cBioPortalLINC01402
AceView (NCBI)LINC01402
Genatlas (Paris)LINC01402
SOURCE (Princeton)LINC01402
Genetics Home Reference (NIH)LINC01402
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01402  -     chrX:120117642-120119700 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01402  -     Xq24   [Description]    (hg19-Feb_2009)
GoldenPathLINC01402 - Xq24 [CytoView hg19]  LINC01402 - Xq24 [CytoView hg38]
ImmunoBaseENSG00000228139
Genome Data Viewer NCBILINC01402 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA360663
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01402
Gene ExpressionLINC01402 [ NCBI-GEO ]   LINC01402 [ EBI - ARRAY_EXPRESS ]   LINC01402 [ SEEK ]   LINC01402 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01402 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01402 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)104797536
GTEX Portal (Tissue expression)LINC01402
Human Protein AtlasENSG00000228139-LINC01402 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01402
Human Protein Atlas [tissue]ENSG00000228139-LINC01402 [tissue]
Protein Interaction databases
BioGRIDLINC01402
STRING (EMBL)LINC01402
ZODIACLINC01402
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC01402
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:57:48 CEST 2021

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