Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01419 (long intergenic non-protein coding RNA 1419)

Identity

Alias_symbol (synonym)TCONS_00014497
Other aliasLVCAT7
HGNC (Hugo) LINC01419
LocusID (NCBI) 103352670
Atlas_Id 65980
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 83403758 and ends at 83408897 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01419   50712
Cards
Entrez_Gene (NCBI)LINC01419  103352670  long intergenic non-protein coding RNA 1419
AliasesLVCAT7; TCONS_00014497
GeneCards (Weizmann)LINC01419
Ensembl hg19 (Hinxton)ENSG00000253898 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253898 [Gene_View]  chr8:83403758-83408897 [Contig_View]  LINC01419 [Vega]
ICGC DataPortalENSG00000253898
TCGA cBioPortalLINC01419
AceView (NCBI)LINC01419
Genatlas (Paris)LINC01419
WikiGenes103352670
SOURCE (Princeton)LINC01419
Genetics Home Reference (NIH)LINC01419
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01419  -     chr8:83403758-83408897 +  8q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01419  -     8q21.13   [Description]    (hg19-Feb_2009)
EnsemblLINC01419 - 8q21.13 [CytoView hg19]  LINC01419 - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBILINC01419 [Mapview hg19]  LINC01419 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038578
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01419
Cluster EST : UnigeneHs.399852 [ NCBI ]
CGAP (NCI)Hs.399852
Alternative Splicing GalleryENSG00000253898
Gene ExpressionLINC01419 [ NCBI-GEO ]   LINC01419 [ EBI - ARRAY_EXPRESS ]   LINC01419 [ SEEK ]   LINC01419 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01419 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103352670
GTEX Portal (Tissue expression)LINC01419
Human Protein AtlasENSG00000253898-LINC01419 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01419
DMDM Disease mutations103352670
Blocks (Seattle)LINC01419
Human Protein Atlas [tissue]ENSG00000253898-LINC01419 [tissue]
Protein Interaction databases
FunCoupENSG00000253898
BioGRIDLINC01419
STRING (EMBL)LINC01419
ZODIACLINC01419
Ontologies - Pathways
Huge Navigator LINC01419 [HugePedia]
snp3D : Map Gene to Disease103352670
BioCentury BCIQLINC01419
ClinGenLINC01419
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103352670
Clinical trialLINC01419
Miscellaneous
canSAR (ICR)LINC01419 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01419
EVEXLINC01419
GoPubMedLINC01419
iHOPLINC01419
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:17 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.