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LINC01427 (long intergenic non-protein coding RNA 1427)

Identity

Other alias-
HGNC (Hugo) LINC01427
LocusID (NCBI) 101929663
Atlas_Id 65987
Location 20p11.22  [Link to chromosome band 20p11]
Location_base_pair Starts at 22280229 and ends at 22282801 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01427   50737
Cards
Entrez_Gene (NCBI)LINC01427  101929663  long intergenic non-protein coding RNA 1427
Aliases
GeneCards (Weizmann)LINC01427
Ensembl hg19 (Hinxton)ENSG00000225321 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225321 [Gene_View]  chr20:22280229-22282801 [Contig_View]  LINC01427 [Vega]
ICGC DataPortalENSG00000225321
TCGA cBioPortalLINC01427
AceView (NCBI)LINC01427
Genatlas (Paris)LINC01427
WikiGenes101929663
SOURCE (Princeton)LINC01427
Genetics Home Reference (NIH)LINC01427
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01427  -     chr20:22280229-22282801 -  20p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01427  -     20p11.22   [Description]    (hg19-Feb_2009)
EnsemblLINC01427 - 20p11.22 [CytoView hg19]  LINC01427 - 20p11.22 [CytoView hg38]
Mapping of homologs : NCBILINC01427 [Mapview hg19]  LINC01427 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI142372 AI147364 BU568468 CR627206
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01427
Cluster EST : UnigeneHs.143562 [ NCBI ]
CGAP (NCI)Hs.143562
Alternative Splicing GalleryENSG00000225321
Gene ExpressionLINC01427 [ NCBI-GEO ]   LINC01427 [ EBI - ARRAY_EXPRESS ]   LINC01427 [ SEEK ]   LINC01427 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01427 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929663
GTEX Portal (Tissue expression)LINC01427
Human Protein AtlasENSG00000225321-LINC01427 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01427
DMDM Disease mutations101929663
Blocks (Seattle)LINC01427
Human Protein Atlas [tissue]ENSG00000225321-LINC01427 [tissue]
Protein Interaction databases
FunCoupENSG00000225321
BioGRIDLINC01427
STRING (EMBL)LINC01427
ZODIACLINC01427
Ontologies - Pathways
Huge Navigator LINC01427 [HugePedia]
snp3D : Map Gene to Disease101929663
BioCentury BCIQLINC01427
ClinGenLINC01427
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929663
Clinical trialLINC01427
Miscellaneous
canSAR (ICR)LINC01427 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01427
EVEXLINC01427
GoPubMedLINC01427
iHOPLINC01427
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:18 CET 2017

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