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LINC01431 (long intergenic non-protein coding RNA 1431)

Identity

Other alias-
HGNC (Hugo) LINC01431
LocusID (NCBI) 100505683
Atlas_Id 65991
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23356594 and ends at 23358127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01431   50744
Cards
Entrez_Gene (NCBI)LINC01431  100505683  long intergenic non-protein coding RNA 1431
Aliases
GeneCards (Weizmann)LINC01431
Ensembl hg19 (Hinxton)ENSG00000232645 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232645 [Gene_View]  chr20:23356594-23358127 [Contig_View]  LINC01431 [Vega]
ICGC DataPortalENSG00000232645
TCGA cBioPortalLINC01431
AceView (NCBI)LINC01431
Genatlas (Paris)LINC01431
WikiGenes100505683
SOURCE (Princeton)LINC01431
Genetics Home Reference (NIH)LINC01431
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01431  -     chr20:23356594-23358127 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01431  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblLINC01431 - 20p11.21 [CytoView hg19]  LINC01431 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBILINC01431 [Mapview hg19]  LINC01431 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI693606
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01431
Cluster EST : UnigeneHs.140295 [ NCBI ]
CGAP (NCI)Hs.140295
Alternative Splicing GalleryENSG00000232645
Gene ExpressionLINC01431 [ NCBI-GEO ]   LINC01431 [ EBI - ARRAY_EXPRESS ]   LINC01431 [ SEEK ]   LINC01431 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01431 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505683
GTEX Portal (Tissue expression)LINC01431
Human Protein AtlasENSG00000232645-LINC01431 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01431
DMDM Disease mutations100505683
Blocks (Seattle)LINC01431
Human Protein Atlas [tissue]ENSG00000232645-LINC01431 [tissue]
Protein Interaction databases
FunCoupENSG00000232645
BioGRIDLINC01431
STRING (EMBL)LINC01431
ZODIACLINC01431
Ontologies - Pathways
Huge Navigator LINC01431 [HugePedia]
snp3D : Map Gene to Disease100505683
BioCentury BCIQLINC01431
ClinGenLINC01431
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505683
Clinical trialLINC01431
Miscellaneous
canSAR (ICR)LINC01431 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01431
EVEXLINC01431
GoPubMedLINC01431
iHOPLINC01431
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:43 CET 2017

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