Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01436 (long intergenic non-protein coding RNA 1436)

Identity

Alias_symbol (synonym)AP000688.8
Other alias-
HGNC (Hugo) LINC01436
LocusID (NCBI) 100996609
Atlas_Id 65995
Location 21q22.12  [Link to chromosome band 21q22]
Location_base_pair Starts at 36005320 and ends at 36008295 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01436   50754
Cards
Entrez_Gene (NCBI)LINC01436  100996609  long intergenic non-protein coding RNA 1436
Aliases
GeneCards (Weizmann)LINC01436
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:36005320-36008295 [Contig_View]  LINC01436 [Vega]
TCGA cBioPortalLINC01436
AceView (NCBI)LINC01436
Genatlas (Paris)LINC01436
WikiGenes100996609
SOURCE (Princeton)LINC01436
Genetics Home Reference (NIH)LINC01436
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01436  -     chr21:36005320-36008295 +  21q22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01436  -     21q22.12   [Description]    (hg19-Feb_2009)
EnsemblLINC01436 - 21q22.12 [CytoView hg19]  LINC01436 - 21q22.12 [CytoView hg38]
Mapping of homologs : NCBILINC01436 [Mapview hg19]  LINC01436 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CF127993
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01436
Cluster EST : UnigeneHs.742062 [ NCBI ]
CGAP (NCI)Hs.742062
Gene ExpressionLINC01436 [ NCBI-GEO ]   LINC01436 [ EBI - ARRAY_EXPRESS ]   LINC01436 [ SEEK ]   LINC01436 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01436 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100996609
GTEX Portal (Tissue expression)LINC01436
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01436
DMDM Disease mutations100996609
Blocks (Seattle)LINC01436
Protein Interaction databases
BioGRIDLINC01436
STRING (EMBL)LINC01436
ZODIACLINC01436
Ontologies - Pathways
Huge Navigator LINC01436 [HugePedia]
snp3D : Map Gene to Disease100996609
BioCentury BCIQLINC01436
ClinGenLINC01436
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996609
Clinical trialLINC01436
Miscellaneous
canSAR (ICR)LINC01436 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01436
EVEXLINC01436
GoPubMedLINC01436
iHOPLINC01436
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:59 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.