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LINC01440 (long intergenic non-protein coding RNA 1440)

Identity

Other alias-
HGNC (Hugo) LINC01440
LocusID (NCBI) 102723578
Atlas_Id 65996
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 55423043 and ends at 55426791 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01440   50762
Cards
Entrez_Gene (NCBI)LINC01440  102723578  long intergenic non-protein coding RNA 1440
Aliases
GeneCards (Weizmann)LINC01440
Ensembl hg19 (Hinxton)ENSG00000235166 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235166 [Gene_View]  chr20:55423043-55426791 [Contig_View]  LINC01440 [Vega]
ICGC DataPortalENSG00000235166
TCGA cBioPortalLINC01440
AceView (NCBI)LINC01440
Genatlas (Paris)LINC01440
WikiGenes102723578
SOURCE (Princeton)LINC01440
Genetics Home Reference (NIH)LINC01440
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01440  -     chr20:55423043-55426791 +  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01440  -     20q13.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01440 - 20q13.2 [CytoView hg19]  LINC01440 - 20q13.2 [CytoView hg38]
Mapping of homologs : NCBILINC01440 [Mapview hg19]  LINC01440 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BI464301 BX107747 DB449830
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01440
Cluster EST : UnigeneHs.446269 [ NCBI ]
CGAP (NCI)Hs.446269
Alternative Splicing GalleryENSG00000235166
Gene ExpressionLINC01440 [ NCBI-GEO ]   LINC01440 [ EBI - ARRAY_EXPRESS ]   LINC01440 [ SEEK ]   LINC01440 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01440 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723578
GTEX Portal (Tissue expression)LINC01440
Human Protein AtlasENSG00000235166-LINC01440 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01440
DMDM Disease mutations102723578
Blocks (Seattle)LINC01440
Human Protein Atlas [tissue]ENSG00000235166-LINC01440 [tissue]
Protein Interaction databases
FunCoupENSG00000235166
BioGRIDLINC01440
STRING (EMBL)LINC01440
ZODIACLINC01440
Ontologies - Pathways
Huge Navigator LINC01440 [HugePedia]
snp3D : Map Gene to Disease102723578
BioCentury BCIQLINC01440
ClinGenLINC01440
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723578
Clinical trialLINC01440
Miscellaneous
canSAR (ICR)LINC01440 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01440
EVEXLINC01440
GoPubMedLINC01440
iHOPLINC01440
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:43 CET 2017

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