Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01451 (long intergenic non-protein coding RNA 1451)

Identity

Alias_namesHCCAT4
hepatocellular carcinoma associated transcript 4 (non-protein coding)
Other alias
HGNC (Hugo) LINC01451
LocusID (NCBI) 401561
Atlas_Id 53341
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136612028 and ends at 136617181 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01451   48599
Cards
Entrez_Gene (NCBI)LINC01451  401561  long intergenic non-protein coding RNA 1451
AliasesHCCAT4
GeneCards (Weizmann)LINC01451
Ensembl hg19 (Hinxton)ENSG00000279141 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279141 [Gene_View]  chr9:136612028-136617181 [Contig_View]  LINC01451 [Vega]
ICGC DataPortalENSG00000279141
TCGA cBioPortalLINC01451
AceView (NCBI)LINC01451
Genatlas (Paris)LINC01451
WikiGenes401561
SOURCE (Princeton)LINC01451
Genetics Home Reference (NIH)LINC01451
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01451  -     chr9:136612028-136617181 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01451  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01451 - 9q34.3 [CytoView hg19]  LINC01451 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBILINC01451 [Mapview hg19]  LINC01451 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY129027
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01451
Cluster EST : UnigeneHs.609301 [ NCBI ]
CGAP (NCI)Hs.609301
Alternative Splicing GalleryENSG00000279141
Gene ExpressionLINC01451 [ NCBI-GEO ]   LINC01451 [ EBI - ARRAY_EXPRESS ]   LINC01451 [ SEEK ]   LINC01451 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01451 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401561
GTEX Portal (Tissue expression)LINC01451
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01451
DMDM Disease mutations401561
Blocks (Seattle)LINC01451
Human Protein AtlasENSG00000279141
IPIIPI00433436   
Protein Interaction databases
FunCoupENSG00000279141
BioGRIDLINC01451
STRING (EMBL)LINC01451
ZODIACLINC01451
Ontologies - Pathways
Huge Navigator LINC01451 [HugePedia]
snp3D : Map Gene to Disease401561
BioCentury BCIQLINC01451
ClinGenLINC01451
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401561
Clinical trialLINC01451
Miscellaneous
canSAR (ICR)LINC01451 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01451
EVEXLINC01451
GoPubMedLINC01451
iHOPLINC01451
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:40:41 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.