Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01465 (long intergenic non-protein coding RNA 1465)

Identity

Alias_namesC12orf61
chromosome 12 open reading frame 61
Alias_symbol (synonym)FLJ25590
Other alias
HGNC (Hugo) LINC01465
LocusID (NCBI) 283416
Atlas_Id 66010
Location 12q14.1  [Link to chromosome band 12q14]
Location_base_pair Starts at 62601751 and ends at 62603434 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01465   26364
Cards
Entrez_Gene (NCBI)LINC01465  283416  long intergenic non-protein coding RNA 1465
AliasesC12orf61
GeneCards (Weizmann)LINC01465
Ensembl hg19 (Hinxton)ENSG00000221949 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221949 [Gene_View]  chr12:62601751-62603434 [Contig_View]  LINC01465 [Vega]
ICGC DataPortalENSG00000221949
TCGA cBioPortalLINC01465
AceView (NCBI)LINC01465
Genatlas (Paris)LINC01465
WikiGenes283416
SOURCE (Princeton)LINC01465
Genetics Home Reference (NIH)LINC01465
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01465  -     chr12:62601751-62603434 -  12q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01465  -     12q14.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01465 - 12q14.1 [CytoView hg19]  LINC01465 - 12q14.1 [CytoView hg38]
Mapping of homologs : NCBILINC01465 [Mapview hg19]  LINC01465 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098456 BC038738 BC136288
RefSeq transcript (Entrez)NM_175895
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01465
Cluster EST : UnigeneHs.375881 [ NCBI ]
CGAP (NCI)Hs.375881
Alternative Splicing GalleryENSG00000221949
Gene ExpressionLINC01465 [ NCBI-GEO ]   LINC01465 [ EBI - ARRAY_EXPRESS ]   LINC01465 [ SEEK ]   LINC01465 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01465 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283416
GTEX Portal (Tissue expression)LINC01465
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7H1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7H1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7H1
Splice isoforms : SwissVarQ8N7H1
PhosPhoSitePlusQ8N7H1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01465
DMDM Disease mutations283416
Blocks (Seattle)LINC01465
SuperfamilyQ8N7H1
Human Protein AtlasENSG00000221949
Peptide AtlasQ8N7H1
HPRD08070
IPIIPI00167205   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7H1
IntAct (EBI)Q8N7H1
FunCoupENSG00000221949
BioGRIDLINC01465
STRING (EMBL)LINC01465
ZODIACLINC01465
Ontologies - Pathways
QuickGOQ8N7H1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01465
Atlas of Cancer Signalling NetworkLINC01465
Wikipedia pathwaysLINC01465
Orthology - Evolution
OrthoDB283416
GeneTree (enSembl)ENSG00000221949
Phylogenetic Trees/Animal Genes : TreeFamLINC01465
HOVERGENQ8N7H1
HOGENOMQ8N7H1
Homologs : HomoloGeneLINC01465
Homology/Alignments : Family Browser (UCSC)LINC01465
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01465 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01465
dbVarLINC01465
ClinVarLINC01465
1000_GenomesLINC01465 
Exome Variant ServerLINC01465
ExAC (Exome Aggregation Consortium)LINC01465 (select the gene name)
Genetic variants : HAPMAP283416
Genomic Variants (DGV)LINC01465 [DGVbeta]
DECIPHERLINC01465 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01465 
Mutations
ICGC Data PortalLINC01465 
TCGA Data PortalLINC01465 
Broad Tumor PortalLINC01465
OASIS PortalLINC01465 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01465
BioMutasearch LINC01465
DgiDB (Drug Gene Interaction Database)LINC01465
DoCM (Curated mutations)LINC01465 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01465 (select a term)
intoGenLINC01465
Cancer3DLINC01465(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01465
Genetic Testing Registry LINC01465
NextProtQ8N7H1 [Medical]
TSGene283416
GENETestsLINC01465
Target ValidationLINC01465
Huge Navigator LINC01465 [HugePedia]
snp3D : Map Gene to Disease283416
BioCentury BCIQLINC01465
ClinGenLINC01465
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283416
Chemical/Pharm GKB GenePA143485390
Clinical trialLINC01465
Miscellaneous
canSAR (ICR)LINC01465 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01465
EVEXLINC01465
GoPubMedLINC01465
iHOPLINC01465
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:14:37 CEST 2017

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