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LINC01488 (long intergenic non-protein coding RNA 1488)

Identity

Other aliasBRCAT8
HGNC (Hugo) LINC01488
LocusID (NCBI) 101928292
Atlas_Id 66030
Location 11q13.3  [Link to chromosome band 11q13]
Location_base_pair Starts at 69485561 and ends at 69493543 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC01488   51144
Cards
Entrez_Gene (NCBI)LINC01488  101928292  long intergenic non-protein coding RNA 1488
AliasesBRCAT8
GeneCards (Weizmann)LINC01488
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:69485561-69493543 [Contig_View]  LINC01488 [Vega]
TCGA cBioPortalLINC01488
AceView (NCBI)LINC01488
Genatlas (Paris)LINC01488
WikiGenes101928292
SOURCE (Princeton)LINC01488
Genetics Home Reference (NIH)LINC01488
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01488  -     chr11:69485561-69493543 +  11q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01488  -     11q13.3   [Description]    (hg19-Feb_2009)
LINC01488 - 11q13.3 [CytoView hg19]  LINC01488 - 11q13.3 [CytoView hg38]
Mapping of homologs : NCBILINC01488 [Mapview hg19]  LINC01488 [Mapview hg38]
Gene and transcription
Genbank (Entrez)GU369676 KC136297 KC136298 KC136299 KC136300
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01488
Cluster EST : UnigeneHs.736219 [ NCBI ]
CGAP (NCI)Hs.736219
Gene ExpressionLINC01488 [ NCBI-GEO ]   LINC01488 [ EBI - ARRAY_EXPRESS ]   LINC01488 [ SEEK ]   LINC01488 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01488 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928292
GTEX Portal (Tissue expression)LINC01488
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01488
DMDM Disease mutations101928292
Blocks (Seattle)LINC01488
Protein Interaction databases
BioGRIDLINC01488
STRING (EMBL)LINC01488
ZODIACLINC01488
Ontologies - Pathways
Huge Navigator LINC01488 [HugePedia]
snp3D : Map Gene to Disease101928292
BioCentury BCIQLINC01488
ClinGenLINC01488
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928292
Clinical trialLINC01488
Miscellaneous
canSAR (ICR)LINC01488 (select the gene name)
DataMed IndexLINC01488
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01488
EVEXLINC01488
GoPubMedLINC01488
iHOPLINC01488
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 21 14:53:00 CET 2019
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