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LINC01490 (long intergenic non-protein coding RNA 1490)

Identity

Other alias-
HGNC (Hugo) LINC01490
LocusID (NCBI) 101928420
Atlas_Id 66032
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 80763154 and ends at 80770715 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01490   51146
Cards
Entrez_Gene (NCBI)LINC01490  101928420  long intergenic non-protein coding RNA 1490
Aliases
GeneCards (Weizmann)LINC01490
Ensembl hg19 (Hinxton)ENSG00000257741 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257741 [Gene_View]  chr12:80763154-80770715 [Contig_View]  LINC01490 [Vega]
ICGC DataPortalENSG00000257741
TCGA cBioPortalLINC01490
AceView (NCBI)LINC01490
Genatlas (Paris)LINC01490
WikiGenes101928420
SOURCE (Princeton)LINC01490
Genetics Home Reference (NIH)LINC01490
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01490  -     chr12:80763154-80770715 +  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01490  -     12q21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC01490 - 12q21.31 [CytoView hg19]  LINC01490 - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBILINC01490 [Mapview hg19]  LINC01490 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC037383 DB446795 HY030171
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01490
Cluster EST : UnigeneHs.739989 [ NCBI ]
CGAP (NCI)Hs.739989
Alternative Splicing GalleryENSG00000257741
Gene ExpressionLINC01490 [ NCBI-GEO ]   LINC01490 [ EBI - ARRAY_EXPRESS ]   LINC01490 [ SEEK ]   LINC01490 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01490 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928420
GTEX Portal (Tissue expression)LINC01490
Human Protein AtlasENSG00000257741-LINC01490 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01490
DMDM Disease mutations101928420
Blocks (Seattle)LINC01490
Human Protein Atlas [tissue]ENSG00000257741-LINC01490 [tissue]
Protein Interaction databases
FunCoupENSG00000257741
BioGRIDLINC01490
STRING (EMBL)LINC01490
ZODIACLINC01490
Ontologies - Pathways
Huge Navigator LINC01490 [HugePedia]
snp3D : Map Gene to Disease101928420
BioCentury BCIQLINC01490
ClinGenLINC01490
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928420
Clinical trialLINC01490
Miscellaneous
canSAR (ICR)LINC01490 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01490
EVEXLINC01490
GoPubMedLINC01490
iHOPLINC01490
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:27 CET 2017


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