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LINC01498 (long intergenic non-protein coding RNA 1498)

Identity

Other alias-
HGNC (Hugo) LINC01498
LocusID (NCBI) 102723562
Atlas_Id 66040
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 108459425 and ends at 108473689 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01498   51164
Cards
Entrez_Gene (NCBI)LINC01498  102723562  long intergenic non-protein coding RNA 1498
Aliases
GeneCards (Weizmann)LINC01498
Ensembl hg19 (Hinxton)ENSG00000247213 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000247213 [Gene_View]  chr12:108459425-108473689 [Contig_View]  LINC01498 [Vega]
ICGC DataPortalENSG00000247213
TCGA cBioPortalLINC01498
AceView (NCBI)LINC01498
Genatlas (Paris)LINC01498
WikiGenes102723562
SOURCE (Princeton)LINC01498
Genetics Home Reference (NIH)LINC01498
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01498  -     chr12:108459425-108473689 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01498  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01498 - 12q23.3 [CytoView hg19]  LINC01498 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBILINC01498 [Mapview hg19]  LINC01498 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX648662 DB089475
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01498
Cluster EST : UnigeneHs.455693 [ NCBI ]
CGAP (NCI)Hs.455693
Alternative Splicing GalleryENSG00000247213
Gene ExpressionLINC01498 [ NCBI-GEO ]   LINC01498 [ EBI - ARRAY_EXPRESS ]   LINC01498 [ SEEK ]   LINC01498 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01498 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723562
GTEX Portal (Tissue expression)LINC01498
Human Protein AtlasENSG00000247213-LINC01498 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01498
DMDM Disease mutations102723562
Blocks (Seattle)LINC01498
Human Protein Atlas [tissue]ENSG00000247213-LINC01498 [tissue]
Protein Interaction databases
FunCoupENSG00000247213
BioGRIDLINC01498
STRING (EMBL)LINC01498
ZODIACLINC01498
Ontologies - Pathways
Huge Navigator LINC01498 [HugePedia]
snp3D : Map Gene to Disease102723562
BioCentury BCIQLINC01498
ClinGenLINC01498
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723562
Clinical trialLINC01498
Miscellaneous
canSAR (ICR)LINC01498 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01498
EVEXLINC01498
GoPubMedLINC01498
iHOPLINC01498
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:29 CET 2017

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