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LINC01504 (long intergenic non-protein coding RNA 1504)

Identity

Other alias-
HGNC (Hugo) LINC01504
LocusID (NCBI) 100507540
Atlas_Id 66046
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 72305436 and ends at 72343210 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01504   51185
Cards
Entrez_Gene (NCBI)LINC01504  100507540  long intergenic non-protein coding RNA 1504
Aliases
GeneCards (Weizmann)LINC01504
Ensembl hg19 (Hinxton)ENSG00000225434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225434 [Gene_View]  chr9:72305436-72343210 [Contig_View]  LINC01504 [Vega]
ICGC DataPortalENSG00000225434
TCGA cBioPortalLINC01504
AceView (NCBI)LINC01504
Genatlas (Paris)LINC01504
WikiGenes100507540
SOURCE (Princeton)LINC01504
Genetics Home Reference (NIH)LINC01504
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01504  -     chr9:72305436-72343210 +  9q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01504  -     9q21.13   [Description]    (hg19-Feb_2009)
EnsemblLINC01504 - 9q21.13 [CytoView hg19]  LINC01504 - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBILINC01504 [Mapview hg19]  LINC01504 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA436218 AK095210 N93488
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01504
Cluster EST : UnigeneHs.54957 [ NCBI ]
CGAP (NCI)Hs.54957
Alternative Splicing GalleryENSG00000225434
Gene ExpressionLINC01504 [ NCBI-GEO ]   LINC01504 [ EBI - ARRAY_EXPRESS ]   LINC01504 [ SEEK ]   LINC01504 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01504 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507540
GTEX Portal (Tissue expression)LINC01504
Human Protein AtlasENSG00000225434-LINC01504 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01504
DMDM Disease mutations100507540
Blocks (Seattle)LINC01504
Human Protein Atlas [tissue]ENSG00000225434-LINC01504 [tissue]
Protein Interaction databases
FunCoupENSG00000225434
BioGRIDLINC01504
STRING (EMBL)LINC01504
ZODIACLINC01504
Ontologies - Pathways
Huge Navigator LINC01504 [HugePedia]
snp3D : Map Gene to Disease100507540
BioCentury BCIQLINC01504
ClinGenLINC01504
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507540
Clinical trialLINC01504
Miscellaneous
canSAR (ICR)LINC01504 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01504
EVEXLINC01504
GoPubMedLINC01504
iHOPLINC01504
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:17 CET 2017

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