Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01516 (long intergenic non-protein coding RNA 1516)

Identity

Other alias-
HGNC (Hugo) LINC01516
LocusID (NCBI) 101929025
Atlas_Id 66057
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 25113058 and ends at 25161233 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01516   51211
Cards
Entrez_Gene (NCBI)LINC01516  101929025  long intergenic non-protein coding RNA 1516
Aliases
GeneCards (Weizmann)LINC01516
Ensembl hg19 (Hinxton)ENSG00000231422 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231422 [Gene_View]  chr10:25113058-25161233 [Contig_View]  LINC01516 [Vega]
ICGC DataPortalENSG00000231422
TCGA cBioPortalLINC01516
AceView (NCBI)LINC01516
Genatlas (Paris)LINC01516
WikiGenes101929025
SOURCE (Princeton)LINC01516
Genetics Home Reference (NIH)LINC01516
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01516  -     chr10:25113058-25161233 +  10p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01516  -     10p12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01516 - 10p12.1 [CytoView hg19]  LINC01516 - 10p12.1 [CytoView hg38]
Mapping of homologs : NCBILINC01516 [Mapview hg19]  LINC01516 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042983 DA753967
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01516
Cluster EST : UnigeneHs.712230 [ NCBI ]
CGAP (NCI)Hs.712230
Alternative Splicing GalleryENSG00000231422
Gene ExpressionLINC01516 [ NCBI-GEO ]   LINC01516 [ EBI - ARRAY_EXPRESS ]   LINC01516 [ SEEK ]   LINC01516 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01516 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929025
GTEX Portal (Tissue expression)LINC01516
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01516
DMDM Disease mutations101929025
Blocks (Seattle)LINC01516
Human Protein AtlasENSG00000231422
Protein Interaction databases
FunCoupENSG00000231422
BioGRIDLINC01516
STRING (EMBL)LINC01516
ZODIACLINC01516
Ontologies - Pathways
Huge Navigator LINC01516 [HugePedia]
snp3D : Map Gene to Disease101929025
BioCentury BCIQLINC01516
ClinGenLINC01516
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929025
Clinical trialLINC01516
Miscellaneous
canSAR (ICR)LINC01516 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01516
EVEXLINC01516
GoPubMedLINC01516
iHOPLINC01516
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:59:16 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.