Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01516 (long intergenic non-protein coding RNA 1516)


Alias (NCBI)-
HGNC (Hugo) LINC01516
LocusID (NCBI) 101929025
Atlas_Id 66057
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 25113058 and ends at 25161233 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01516   51211
Entrez_Gene (NCBI)LINC01516    long intergenic non-protein coding RNA 1516
GeneCards (Weizmann)LINC01516
Ensembl hg19 (Hinxton)ENSG00000231422 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231422 [Gene_View]  ENSG00000231422 [Sequence]  chr10:25113058-25161233 [Contig_View]  LINC01516 [Vega]
ICGC DataPortalENSG00000231422
TCGA cBioPortalLINC01516
AceView (NCBI)LINC01516
Genatlas (Paris)LINC01516
SOURCE (Princeton)LINC01516
Genetics Home Reference (NIH)LINC01516
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01516  -     chr10:25113058-25161233 +  10p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01516  -     10p12.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01516 - 10p12.1 [CytoView hg19]  LINC01516 - 10p12.1 [CytoView hg38]
Genome Data Viewer NCBILINC01516 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC042983 DA753967
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01516
Gene ExpressionLINC01516 [ NCBI-GEO ]   LINC01516 [ EBI - ARRAY_EXPRESS ]   LINC01516 [ SEEK ]   LINC01516 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01516 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01516 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101929025
GTEX Portal (Tissue expression)LINC01516
Human Protein AtlasENSG00000231422-LINC01516 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01516
Human Protein Atlas [tissue]ENSG00000231422-LINC01516 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:58:02 CEST 2021

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