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LINC01517 (long intergenic non-protein coding RNA 1517)

Identity

Other alias-
HGNC (Hugo) LINC01517
LocusID (NCBI) 101929218
Atlas_Id 66058
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 28743650 and ends at 28808219 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01517   51212
Cards
Entrez_Gene (NCBI)LINC01517  101929218  long intergenic non-protein coding RNA 1517
Aliases
GeneCards (Weizmann)LINC01517
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:28743650-28808219 [Contig_View]  LINC01517 [Vega]
TCGA cBioPortalLINC01517
AceView (NCBI)LINC01517
Genatlas (Paris)LINC01517
WikiGenes101929218
SOURCE (Princeton)LINC01517
Genetics Home Reference (NIH)LINC01517
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01517  -     chr10:28743650-28808219 +  10p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01517  -     10p12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01517 - 10p12.1 [CytoView hg19]  LINC01517 - 10p12.1 [CytoView hg38]
Mapping of homologs : NCBILINC01517 [Mapview hg19]  LINC01517 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI184680 HY018074 HY052409
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01517
Cluster EST : UnigeneHs.224866 [ NCBI ]
CGAP (NCI)Hs.224866
Gene ExpressionLINC01517 [ NCBI-GEO ]   LINC01517 [ EBI - ARRAY_EXPRESS ]   LINC01517 [ SEEK ]   LINC01517 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01517 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929218
GTEX Portal (Tissue expression)LINC01517
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01517
DMDM Disease mutations101929218
Blocks (Seattle)LINC01517
Protein Interaction databases
BioGRIDLINC01517
STRING (EMBL)LINC01517
ZODIACLINC01517
Ontologies - Pathways
Huge Navigator LINC01517 [HugePedia]
snp3D : Map Gene to Disease101929218
BioCentury BCIQLINC01517
ClinGenLINC01517
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929218
Clinical trialLINC01517
Miscellaneous
canSAR (ICR)LINC01517 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01517
EVEXLINC01517
GoPubMedLINC01517
iHOPLINC01517
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:21:57 CET 2017

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