Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01520 (long intergenic non-protein coding RNA 1520)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC01520
LocusID (NCBI) 101929684
Atlas_Id 66061
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 85449592 and ends at 85492001 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC01520   51218
Cards
Entrez_Gene (NCBI)LINC01520    long intergenic non-protein coding RNA 1520
Aliases
GeneCards (Weizmann)LINC01520
Ensembl hg19 (Hinxton)ENSG00000230962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230962 [Gene_View]  ENSG00000230962 [Sequence]  chr10:85449592-85492001 [Contig_View]  LINC01520 [Vega]
ICGC DataPortalENSG00000230962
TCGA cBioPortalLINC01520
AceView (NCBI)LINC01520
Genatlas (Paris)LINC01520
SOURCE (Princeton)LINC01520
Genetics Home Reference (NIH)LINC01520
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01520  -     chr10:85449592-85492001 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01520  -     10q23.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01520 - 10q23.1 [CytoView hg19]  LINC01520 - 10q23.1 [CytoView hg38]
ImmunoBaseENSG00000230962
Genome Data Viewer NCBILINC01520 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AL117638 BG195264
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01520
Gene ExpressionLINC01520 [ NCBI-GEO ]   LINC01520 [ EBI - ARRAY_EXPRESS ]   LINC01520 [ SEEK ]   LINC01520 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01520 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01520 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101929684
GTEX Portal (Tissue expression)LINC01520
Human Protein AtlasENSG00000230962-LINC01520 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01520
Human Protein Atlas [tissue]ENSG00000230962-LINC01520 [tissue]
Protein Interaction databases
BioGRIDLINC01520
STRING (EMBL)LINC01520
ZODIACLINC01520
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC01520
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:58:03 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.