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LINC01534 (long intergenic non-protein coding RNA 1534)

Identity

Other alias-
HGNC (Hugo) LINC01534
LocusID (NCBI) 101927621
Atlas_Id 66073
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36685439 and ends at 36687449 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01534   51281
Cards
Entrez_Gene (NCBI)LINC01534  101927621  long intergenic non-protein coding RNA 1534
Aliases
GeneCards (Weizmann)LINC01534
Ensembl hg19 (Hinxton)ENSG00000225975 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225975 [Gene_View]  chr19:36685439-36687449 [Contig_View]  LINC01534 [Vega]
ICGC DataPortalENSG00000225975
TCGA cBioPortalLINC01534
AceView (NCBI)LINC01534
Genatlas (Paris)LINC01534
WikiGenes101927621
SOURCE (Princeton)LINC01534
Genetics Home Reference (NIH)LINC01534
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01534  -     chr19:36685439-36687449 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01534  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblLINC01534 - 19q13.12 [CytoView hg19]  LINC01534 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBILINC01534 [Mapview hg19]  LINC01534 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM701845 BQ049787 DA064533 DA195154
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01534
Cluster EST : UnigeneHs.125653 [ NCBI ]
CGAP (NCI)Hs.125653
Alternative Splicing GalleryENSG00000225975
Gene ExpressionLINC01534 [ NCBI-GEO ]   LINC01534 [ EBI - ARRAY_EXPRESS ]   LINC01534 [ SEEK ]   LINC01534 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01534 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927621
GTEX Portal (Tissue expression)LINC01534
Human Protein AtlasENSG00000225975-LINC01534 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01534
DMDM Disease mutations101927621
Blocks (Seattle)LINC01534
Human Protein Atlas [tissue]ENSG00000225975-LINC01534 [tissue]
Protein Interaction databases
FunCoupENSG00000225975
BioGRIDLINC01534
STRING (EMBL)LINC01534
ZODIACLINC01534
Ontologies - Pathways
Huge Navigator LINC01534 [HugePedia]
snp3D : Map Gene to Disease101927621
BioCentury BCIQLINC01534
ClinGenLINC01534
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927621
Clinical trialLINC01534
Miscellaneous
canSAR (ICR)LINC01534 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01534
EVEXLINC01534
GoPubMedLINC01534
iHOPLINC01534
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:55 CET 2017

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