Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01538 (long intergenic non-protein coding RNA 1538)

Identity

Alias_symbol (synonym)TCONS_00026184
Other alias-
HGNC (Hugo) LINC01538
LocusID (NCBI) 400654
Atlas_Id 66076
Location 18q22.1  [Link to chromosome band 18q22]
Location_base_pair Starts at 64213083 and ends at 64260055 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01538   51306
Cards
Entrez_Gene (NCBI)LINC01538  400654  long intergenic non-protein coding RNA 1538
Aliases
GeneCards (Weizmann)LINC01538
Ensembl hg19 (Hinxton)ENSG00000266952 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266952 [Gene_View]  chr18:64213083-64260055 [Contig_View]  LINC01538 [Vega]
ICGC DataPortalENSG00000266952
TCGA cBioPortalLINC01538
AceView (NCBI)LINC01538
Genatlas (Paris)LINC01538
WikiGenes400654
SOURCE (Princeton)LINC01538
Genetics Home Reference (NIH)LINC01538
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01538  -     chr18:64213083-64260055 -  18q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01538  -     18q22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01538 - 18q22.1 [CytoView hg19]  LINC01538 - 18q22.1 [CytoView hg38]
Mapping of homologs : NCBILINC01538 [Mapview hg19]  LINC01538 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042493 BG722547
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01538
Cluster EST : UnigeneHs.434235 [ NCBI ]
CGAP (NCI)Hs.434235
Alternative Splicing GalleryENSG00000266952
Gene ExpressionLINC01538 [ NCBI-GEO ]   LINC01538 [ EBI - ARRAY_EXPRESS ]   LINC01538 [ SEEK ]   LINC01538 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01538 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400654
GTEX Portal (Tissue expression)LINC01538
Human Protein AtlasENSG00000266952-LINC01538 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01538
DMDM Disease mutations400654
Blocks (Seattle)LINC01538
Human Protein Atlas [tissue]ENSG00000266952-LINC01538 [tissue]
Protein Interaction databases
FunCoupENSG00000266952
BioGRIDLINC01538
STRING (EMBL)LINC01538
ZODIACLINC01538
Ontologies - Pathways
Huge Navigator LINC01538 [HugePedia]
snp3D : Map Gene to Disease400654
BioCentury BCIQLINC01538
ClinGenLINC01538
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400654
Clinical trialLINC01538
Miscellaneous
canSAR (ICR)LINC01538 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01538
EVEXLINC01538
GoPubMedLINC01538
iHOPLINC01538
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:36 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.