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LINC01539 (long intergenic non-protein coding RNA 1539)

Identity

Other alias-
HGNC (Hugo) LINC01539
LocusID (NCBI) 100505474
Atlas_Id 66077
Location 18q21.2  [Link to chromosome band 18q21]
Location_base_pair Starts at 56083356 and ends at 56137536 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01539   51307
Cards
Entrez_Gene (NCBI)LINC01539  100505474  long intergenic non-protein coding RNA 1539
Aliases
GeneCards (Weizmann)LINC01539
Ensembl hg19 (Hinxton)ENSG00000267712 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267712 [Gene_View]  chr18:56083356-56137536 [Contig_View]  LINC01539 [Vega]
ICGC DataPortalENSG00000267712
TCGA cBioPortalLINC01539
AceView (NCBI)LINC01539
Genatlas (Paris)LINC01539
WikiGenes100505474
SOURCE (Princeton)LINC01539
Genetics Home Reference (NIH)LINC01539
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01539  -     chr18:56083356-56137536 -  18q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01539  -     18q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01539 - 18q21.2 [CytoView hg19]  LINC01539 - 18q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01539 [Mapview hg19]  LINC01539 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057336 AK058169
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01539
Cluster EST : UnigeneHs.662191 [ NCBI ]
CGAP (NCI)Hs.662191
Alternative Splicing GalleryENSG00000267712
Gene ExpressionLINC01539 [ NCBI-GEO ]   LINC01539 [ EBI - ARRAY_EXPRESS ]   LINC01539 [ SEEK ]   LINC01539 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01539 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505474
GTEX Portal (Tissue expression)LINC01539
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01539
DMDM Disease mutations100505474
Blocks (Seattle)LINC01539
Human Protein AtlasENSG00000267712
Protein Interaction databases
FunCoupENSG00000267712
BioGRIDLINC01539
STRING (EMBL)LINC01539
ZODIACLINC01539
Ontologies - Pathways
Huge Navigator LINC01539 [HugePedia]
snp3D : Map Gene to Disease100505474
BioCentury BCIQLINC01539
ClinGenLINC01539
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505474
Clinical trialLINC01539
Miscellaneous
canSAR (ICR)LINC01539 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01539
EVEXLINC01539
GoPubMedLINC01539
iHOPLINC01539
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:14:47 CEST 2017

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