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LINC01541 (long intergenic non-protein coding RNA 1541)

Identity

Other aliasUTAT39
HGNC (Hugo) LINC01541
LocusID (NCBI) 100505776
Atlas_Id 66079
Location 18q22.3  [Link to chromosome band 18q22]
Location_base_pair Starts at 71519964 and ends at 71578956 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01541   51309
Cards
Entrez_Gene (NCBI)LINC01541  100505776  long intergenic non-protein coding RNA 1541
AliasesUTAT39
GeneCards (Weizmann)LINC01541
Ensembl hg19 (Hinxton)ENSG00000260676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260676 [Gene_View]  chr18:71519964-71578956 [Contig_View]  LINC01541 [Vega]
ICGC DataPortalENSG00000260676
TCGA cBioPortalLINC01541
AceView (NCBI)LINC01541
Genatlas (Paris)LINC01541
WikiGenes100505776
SOURCE (Princeton)LINC01541
Genetics Home Reference (NIH)LINC01541
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01541  -     chr18:71519964-71578956 -  18q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01541  -     18q22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01541 - 18q22.3 [CytoView hg19]  LINC01541 - 18q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC01541 [Mapview hg19]  LINC01541 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093976 BX648957
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01541
Cluster EST : UnigeneHs.202072 [ NCBI ]
CGAP (NCI)Hs.202072
Alternative Splicing GalleryENSG00000260676
Gene ExpressionLINC01541 [ NCBI-GEO ]   LINC01541 [ EBI - ARRAY_EXPRESS ]   LINC01541 [ SEEK ]   LINC01541 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01541 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505776
GTEX Portal (Tissue expression)LINC01541
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01541
DMDM Disease mutations100505776
Blocks (Seattle)LINC01541
Human Protein AtlasENSG00000260676
Protein Interaction databases
FunCoupENSG00000260676
BioGRIDLINC01541
STRING (EMBL)LINC01541
ZODIACLINC01541
Ontologies - Pathways
Huge Navigator LINC01541 [HugePedia]
snp3D : Map Gene to Disease100505776
BioCentury BCIQLINC01541
ClinGenLINC01541
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505776
Clinical trialLINC01541
Miscellaneous
canSAR (ICR)LINC01541 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01541
EVEXLINC01541
GoPubMedLINC01541
iHOPLINC01541
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:14:48 CEST 2017

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