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LINC01544 (long intergenic non-protein coding RNA 1544)

Identity

Alias_symbol (synonym)TCONS_00026194
Other alias-
HGNC (Hugo) LINC01544
LocusID (NCBI) 100996669
Atlas_Id 66081
Location 18q21.33  [Link to chromosome band 18q21]
Location_base_pair Starts at 61748176 and ends at 61754695 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01544   51312
Cards
Entrez_Gene (NCBI)LINC01544  100996669  long intergenic non-protein coding RNA 1544
Aliases
GeneCards (Weizmann)LINC01544
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:61748176-61754695 [Contig_View]  LINC01544 [Vega]
TCGA cBioPortalLINC01544
AceView (NCBI)LINC01544
Genatlas (Paris)LINC01544
WikiGenes100996669
SOURCE (Princeton)LINC01544
Genetics Home Reference (NIH)LINC01544
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01544  -     chr18:61748176-61754695 +  18q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01544  -     18q21.33   [Description]    (hg19-Feb_2009)
EnsemblLINC01544 - 18q21.33 [CytoView hg19]  LINC01544 - 18q21.33 [CytoView hg38]
Mapping of homologs : NCBILINC01544 [Mapview hg19]  LINC01544 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054836 AK091955
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01544
Cluster EST : UnigeneHs.586981 [ NCBI ]
CGAP (NCI)Hs.586981
Gene ExpressionLINC01544 [ NCBI-GEO ]   LINC01544 [ EBI - ARRAY_EXPRESS ]   LINC01544 [ SEEK ]   LINC01544 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01544 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100996669
GTEX Portal (Tissue expression)LINC01544
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01544
DMDM Disease mutations100996669
Blocks (Seattle)LINC01544
Protein Interaction databases
BioGRIDLINC01544
STRING (EMBL)LINC01544
ZODIACLINC01544
Ontologies - Pathways
Huge Navigator LINC01544 [HugePedia]
snp3D : Map Gene to Disease100996669
BioCentury BCIQLINC01544
ClinGenLINC01544
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996669
Clinical trialLINC01544
Miscellaneous
canSAR (ICR)LINC01544 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01544
EVEXLINC01544
GoPubMedLINC01544
iHOPLINC01544
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:37 CET 2017

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