Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01546 (long intergenic non-protein coding RNA 1546)

Identity

Alias_namesCXorf28
chromosome X open reading frame 28
Other alias
HGNC (Hugo) LINC01546
LocusID (NCBI) 100129464
Atlas_Id 47087
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 3189861 and ends at 3202694 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01546   27336
Cards
Entrez_Gene (NCBI)LINC01546  100129464  long intergenic non-protein coding RNA 1546
AliasesCXorf28
GeneCards (Weizmann)LINC01546
Ensembl hg19 (Hinxton)ENSG00000228459 [Gene_View]  chrX:3189861-3202694 [Contig_View]  LINC01546 [Vega]
Ensembl hg38 (Hinxton)ENSG00000228459 [Gene_View]  chrX:3189861-3202694 [Contig_View]  LINC01546 [Vega]
ICGC DataPortalENSG00000228459
TCGA cBioPortalLINC01546
AceView (NCBI)LINC01546
Genatlas (Paris)LINC01546
WikiGenes100129464
SOURCE (Princeton)LINC01546
Genetics Home Reference (NIH)LINC01546
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01546  -     chrX:3189861-3202694 +  Xp22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01546  -     Xp22.33   [Description]    (hg38-Dec_2013)
EnsemblLINC01546 - Xp22.33 [CytoView hg19]  LINC01546 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBILINC01546 [Mapview hg19]  LINC01546 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA662138 AI417893 AW974771 AW974776 BX101503
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_029783 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)LINC01546
Cluster EST : UnigeneHs.187816 [ NCBI ]
CGAP (NCI)Hs.187816
Alternative Splicing GalleryENSG00000228459
Gene ExpressionLINC01546 [ NCBI-GEO ]   LINC01546 [ EBI - ARRAY_EXPRESS ]   LINC01546 [ SEEK ]   LINC01546 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01546 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100129464
GTEX Portal (Tissue expression)LINC01546
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01546
DMDM Disease mutations100129464
Blocks (Seattle)LINC01546
Human Protein AtlasENSG00000228459
IPIIPI00641001   IPI00889536   
Protein Interaction databases
FunCoupENSG00000228459
BioGRIDLINC01546
STRING (EMBL)LINC01546
ZODIACLINC01546
Ontologies - Pathways
Huge Navigator LINC01546 [HugePedia]
snp3D : Map Gene to Disease100129464
BioCentury BCIQLINC01546
ClinGenLINC01546
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129464
Chemical/Pharm GKB GenePA145149068
Clinical trialLINC01546
Miscellaneous
canSAR (ICR)LINC01546 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01546
EVEXLINC01546
GoPubMedLINC01546
iHOPLINC01546
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:12:57 CET 2017

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