Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01546 (long intergenic non-protein coding RNA 1546)

Identity

Alias_namesCXorf28
chromosome X open reading frame 28
Other alias
HGNC (Hugo) LINC01546
LocusID (NCBI) 100129464
Atlas_Id 47087
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 3271820 and ends at 3284653 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01546   27336
Cards
Entrez_Gene (NCBI)LINC01546  100129464  long intergenic non-protein coding RNA 1546
AliasesCXorf28
GeneCards (Weizmann)LINC01546
Ensembl hg19 (Hinxton)ENSG00000228459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228459 [Gene_View]  chrX:3271820-3284653 [Contig_View]  LINC01546 [Vega]
ICGC DataPortalENSG00000228459
TCGA cBioPortalLINC01546
AceView (NCBI)LINC01546
Genatlas (Paris)LINC01546
WikiGenes100129464
SOURCE (Princeton)LINC01546
Genetics Home Reference (NIH)LINC01546
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01546  -     chrX:3271820-3284653 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01546  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblLINC01546 - Xp22.33 [CytoView hg19]  LINC01546 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBILINC01546 [Mapview hg19]  LINC01546 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA662138 AI417893 AW974771 AW974776 BX101503
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01546
Cluster EST : UnigeneHs.187816 [ NCBI ]
CGAP (NCI)Hs.187816
Alternative Splicing GalleryENSG00000228459
Gene ExpressionLINC01546 [ NCBI-GEO ]   LINC01546 [ EBI - ARRAY_EXPRESS ]   LINC01546 [ SEEK ]   LINC01546 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01546 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129464
GTEX Portal (Tissue expression)LINC01546
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGU7
Splice isoforms : SwissVarA6NGU7
PhosPhoSitePlusA6NGU7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01546
DMDM Disease mutations100129464
Blocks (Seattle)LINC01546
SuperfamilyA6NGU7
Human Protein AtlasENSG00000228459
Peptide AtlasA6NGU7
IPIIPI00641001   IPI00889536   
Protein Interaction databases
DIP (DOE-UCLA)A6NGU7
IntAct (EBI)A6NGU7
FunCoupENSG00000228459
BioGRIDLINC01546
STRING (EMBL)LINC01546
ZODIACLINC01546
Ontologies - Pathways
QuickGOA6NGU7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01546
Atlas of Cancer Signalling NetworkLINC01546
Wikipedia pathwaysLINC01546
Orthology - Evolution
OrthoDB100129464
GeneTree (enSembl)ENSG00000228459
Phylogenetic Trees/Animal Genes : TreeFamLINC01546
HOVERGENA6NGU7
HOGENOMA6NGU7
Homologs : HomoloGeneLINC01546
Homology/Alignments : Family Browser (UCSC)LINC01546
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01546 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01546
dbVarLINC01546
ClinVarLINC01546
1000_GenomesLINC01546 
Exome Variant ServerLINC01546
ExAC (Exome Aggregation Consortium)LINC01546 (select the gene name)
Genetic variants : HAPMAP100129464
Genomic Variants (DGV)LINC01546 [DGVbeta]
DECIPHERLINC01546 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01546 
Mutations
ICGC Data PortalLINC01546 
TCGA Data PortalLINC01546 
Broad Tumor PortalLINC01546
OASIS PortalLINC01546 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01546
BioMutasearch LINC01546
DgiDB (Drug Gene Interaction Database)LINC01546
DoCM (Curated mutations)LINC01546 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01546 (select a term)
intoGenLINC01546
Cancer3DLINC01546(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01546
Genetic Testing Registry LINC01546
NextProtA6NGU7 [Medical]
TSGene100129464
GENETestsLINC01546
Target ValidationLINC01546
Huge Navigator LINC01546 [HugePedia]
snp3D : Map Gene to Disease100129464
BioCentury BCIQLINC01546
ClinGenLINC01546
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129464
Chemical/Pharm GKB GenePA145149068
Clinical trialLINC01546
Miscellaneous
canSAR (ICR)LINC01546 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01546
EVEXLINC01546
GoPubMedLINC01546
iHOPLINC01546
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:40:41 CEST 2017

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