Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01547 (long intergenic non-protein coding RNA 1547)

Identity

Alias_namesC21orf69
C21orf67
chromosome 21 open reading frame 69
chromosome 21 open reading frame 67
Other aliasPRED54
HGNC (Hugo) LINC01547
LocusID (NCBI) 84536
Atlas_Id 66084
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44934726 and ends at 44939845 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LINC01547 (21q22.3) / SCAF1 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01547   15707
Cards
Entrez_Gene (NCBI)LINC01547  84536  long intergenic non-protein coding RNA 1547
AliasesC21orf67; C21orf69; PRED54
GeneCards (Weizmann)LINC01547
Ensembl hg19 (Hinxton)ENSG00000183250 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183250 [Gene_View]  chr21:44934726-44939845 [Contig_View]  LINC01547 [Vega]
ICGC DataPortalENSG00000183250
TCGA cBioPortalLINC01547
AceView (NCBI)LINC01547
Genatlas (Paris)LINC01547
WikiGenes84536
SOURCE (Princeton)LINC01547
Genetics Home Reference (NIH)LINC01547
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01547  -     chr21:44934726-44939845 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01547  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01547 - 21q22.3 [CytoView hg19]  LINC01547 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC01547 [Mapview hg19]  LINC01547 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF380178 AK127059 AY035381 AY040088 BC101235
RefSeq transcript (Entrez)NM_058188 NM_058189 NM_182900
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01547
Cluster EST : UnigeneHs.658159 [ NCBI ]
CGAP (NCI)Hs.658159
Alternative Splicing GalleryENSG00000183250
Gene ExpressionLINC01547 [ NCBI-GEO ]   LINC01547 [ EBI - ARRAY_EXPRESS ]   LINC01547 [ SEEK ]   LINC01547 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01547 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84536
GTEX Portal (Tissue expression)LINC01547
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58512   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58512  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58512
Splice isoforms : SwissVarP58512
PhosPhoSitePlusP58512
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01547
DMDM Disease mutations84536
Blocks (Seattle)LINC01547
SuperfamilyP58512
Human Protein AtlasENSG00000183250
Peptide AtlasP58512
HPRD10762
IPIIPI00067917   IPI00219867   IPI00926843   
Protein Interaction databases
DIP (DOE-UCLA)P58512
IntAct (EBI)P58512
FunCoupENSG00000183250
BioGRIDLINC01547
STRING (EMBL)LINC01547
ZODIACLINC01547
Ontologies - Pathways
QuickGOP58512
Ontology : AmiGOendoplasmic reticulum  
Ontology : EGO-EBIendoplasmic reticulum  
NDEx NetworkLINC01547
Atlas of Cancer Signalling NetworkLINC01547
Wikipedia pathwaysLINC01547
Orthology - Evolution
OrthoDB84536
GeneTree (enSembl)ENSG00000183250
Phylogenetic Trees/Animal Genes : TreeFamLINC01547
HOVERGENP58512
HOGENOMP58512
Homologs : HomoloGeneLINC01547
Homology/Alignments : Family Browser (UCSC)LINC01547
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01547 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01547
dbVarLINC01547
ClinVarLINC01547
1000_GenomesLINC01547 
Exome Variant ServerLINC01547
ExAC (Exome Aggregation Consortium)LINC01547 (select the gene name)
Genetic variants : HAPMAP84536
Genomic Variants (DGV)LINC01547 [DGVbeta]
DECIPHERLINC01547 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01547 
Mutations
ICGC Data PortalLINC01547 
TCGA Data PortalLINC01547 
Broad Tumor PortalLINC01547
OASIS PortalLINC01547 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01547
BioMutasearch LINC01547
DgiDB (Drug Gene Interaction Database)LINC01547
DoCM (Curated mutations)LINC01547 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01547 (select a term)
intoGenLINC01547
Cancer3DLINC01547(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01547
Genetic Testing Registry LINC01547
NextProtP58512 [Medical]
TSGene84536
GENETestsLINC01547
Huge Navigator LINC01547 [HugePedia]
snp3D : Map Gene to Disease84536
BioCentury BCIQLINC01547
ClinGenLINC01547
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84536
Chemical/Pharm GKB GenePA25862
Clinical trialLINC01547
Miscellaneous
canSAR (ICR)LINC01547 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01547
EVEXLINC01547
GoPubMedLINC01547
iHOPLINC01547
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:23:09 CEST 2017

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