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LINC01548 (long intergenic non-protein coding RNA 1548)

Identity

Alias_namesC21orf54
chromosome 21 open reading frame 54
Other alias
HGNC (Hugo) LINC01548
LocusID (NCBI) 728409
Atlas_Id 66085
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 33165470 and ends at 33170236 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01548   1296
Cards
Entrez_Gene (NCBI)LINC01548  728409  long intergenic non-protein coding RNA 1548
AliasesC21orf54
GeneCards (Weizmann)LINC01548
Ensembl hg19 (Hinxton)ENSG00000229086 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229086 [Gene_View]  chr21:33165470-33170236 [Contig_View]  LINC01548 [Vega]
ICGC DataPortalENSG00000229086
TCGA cBioPortalLINC01548
AceView (NCBI)LINC01548
Genatlas (Paris)LINC01548
WikiGenes728409
SOURCE (Princeton)LINC01548
Genetics Home Reference (NIH)LINC01548
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01548  -     chr21:33165470-33170236 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01548  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblLINC01548 - 21q22.11 [CytoView hg19]  LINC01548 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBILINC01548 [Mapview hg19]  LINC01548 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC105115 BC105117 BX116511
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01548
Cluster EST : UnigeneHs.125234 [ NCBI ]
CGAP (NCI)Hs.125234
Alternative Splicing GalleryENSG00000229086
Gene ExpressionLINC01548 [ NCBI-GEO ]   LINC01548 [ EBI - ARRAY_EXPRESS ]   LINC01548 [ SEEK ]   LINC01548 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01548 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728409
GTEX Portal (Tissue expression)LINC01548
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NM66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NM66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NM66
Splice isoforms : SwissVarA6NM66
PhosPhoSitePlusA6NM66
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01548
DMDM Disease mutations728409
Blocks (Seattle)LINC01548
SuperfamilyA6NM66
Human Protein AtlasENSG00000229086
Peptide AtlasA6NM66
IPIIPI00234948   
Protein Interaction databases
DIP (DOE-UCLA)A6NM66
IntAct (EBI)A6NM66
FunCoupENSG00000229086
BioGRIDLINC01548
STRING (EMBL)LINC01548
ZODIACLINC01548
Ontologies - Pathways
QuickGOA6NM66
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01548
Atlas of Cancer Signalling NetworkLINC01548
Wikipedia pathwaysLINC01548
Orthology - Evolution
OrthoDB728409
GeneTree (enSembl)ENSG00000229086
Phylogenetic Trees/Animal Genes : TreeFamLINC01548
HOVERGENA6NM66
HOGENOMA6NM66
Homologs : HomoloGeneLINC01548
Homology/Alignments : Family Browser (UCSC)LINC01548
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01548 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01548
dbVarLINC01548
ClinVarLINC01548
1000_GenomesLINC01548 
Exome Variant ServerLINC01548
ExAC (Exome Aggregation Consortium)LINC01548 (select the gene name)
Genetic variants : HAPMAP728409
Genomic Variants (DGV)LINC01548 [DGVbeta]
DECIPHERLINC01548 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01548 
Mutations
ICGC Data PortalLINC01548 
TCGA Data PortalLINC01548 
Broad Tumor PortalLINC01548
OASIS PortalLINC01548 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01548
BioMutasearch LINC01548
DgiDB (Drug Gene Interaction Database)LINC01548
DoCM (Curated mutations)LINC01548 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01548 (select a term)
intoGenLINC01548
Cancer3DLINC01548(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01548
Genetic Testing Registry LINC01548
NextProtA6NM66 [Medical]
TSGene728409
GENETestsLINC01548
Target ValidationLINC01548
Huge Navigator LINC01548 [HugePedia]
snp3D : Map Gene to Disease728409
BioCentury BCIQLINC01548
ClinGenLINC01548
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728409
Chemical/Pharm GKB GenePA25849
Clinical trialLINC01548
Miscellaneous
canSAR (ICR)LINC01548 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01548
EVEXLINC01548
GoPubMedLINC01548
iHOPLINC01548
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:14:48 CEST 2017

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