Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01548 (long intergenic non-protein coding RNA 1548)

Identity

Alias_namesC21orf54
chromosome 21 open reading frame 54
Other alias
HGNC (Hugo) LINC01548
LocusID (NCBI) 728409
Atlas_Id 66085
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 34537776 and ends at 34542541 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01548   1296
Cards
Entrez_Gene (NCBI)LINC01548  728409  long intergenic non-protein coding RNA 1548
AliasesC21orf54
GeneCards (Weizmann)LINC01548
Ensembl hg19 (Hinxton)ENSG00000229086 [Gene_View]  chr21:34537776-34542541 [Contig_View]  LINC01548 [Vega]
Ensembl hg38 (Hinxton)ENSG00000229086 [Gene_View]  chr21:34537776-34542541 [Contig_View]  LINC01548 [Vega]
ICGC DataPortalENSG00000229086
TCGA cBioPortalLINC01548
AceView (NCBI)LINC01548
Genatlas (Paris)LINC01548
WikiGenes728409
SOURCE (Princeton)LINC01548
Genetics Home Reference (NIH)LINC01548
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01548  -     chr21:34537776-34542541 -  21q22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01548  -     21q22.11   [Description]    (hg38-Dec_2013)
EnsemblLINC01548 - 21q22.11 [CytoView hg19]  LINC01548 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBILINC01548 [Mapview hg19]  LINC01548 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC105115 BC105117 BX116511 LN608874
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)LINC01548
Cluster EST : UnigeneHs.125234 [ NCBI ]
CGAP (NCI)Hs.125234
Alternative Splicing GalleryENSG00000229086
Gene ExpressionLINC01548 [ NCBI-GEO ]   LINC01548 [ EBI - ARRAY_EXPRESS ]   LINC01548 [ SEEK ]   LINC01548 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01548 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)728409
GTEX Portal (Tissue expression)LINC01548
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01548
DMDM Disease mutations728409
Blocks (Seattle)LINC01548
Human Protein AtlasENSG00000229086
IPIIPI00234948   
Protein Interaction databases
FunCoupENSG00000229086
BioGRIDLINC01548
STRING (EMBL)LINC01548
ZODIACLINC01548
Ontologies - Pathways
Huge Navigator LINC01548 [HugePedia]
snp3D : Map Gene to Disease728409
BioCentury BCIQLINC01548
ClinGenLINC01548
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728409
Chemical/Pharm GKB GenePA25849
Clinical trialLINC01548
Miscellaneous
canSAR (ICR)LINC01548 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01548
EVEXLINC01548
GoPubMedLINC01548
iHOPLINC01548
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:14:14 CET 2017

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