Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01549 (long intergenic non-protein coding RNA 1549)

Identity

Alias_namesC21orf37
chromosome 21 open reading frame 37
Other alias
HGNC (Hugo) LINC01549
LocusID (NCBI) 100505929
Atlas_Id 78110
Location 21q21.1  [Link to chromosome band 21q21]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01549   1277
Cards
Entrez_Gene (NCBI)LINC01549  100505929  long intergenic non-protein coding RNA 1549
AliasesC21orf37
GeneCards (Weizmann)LINC01549
Ensembl hg19 (Hinxton)ENSG00000232560 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232560 [Gene_View]  - [Contig_View]  LINC01549 [Vega]
ICGC DataPortalENSG00000232560
TCGA cBioPortalLINC01549
AceView (NCBI)LINC01549
Genatlas (Paris)LINC01549
WikiGenes100505929
SOURCE (Princeton)LINC01549
Genetics Home Reference (NIH)LINC01549
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01549  -  
GoldenPath hg19 (UCSC)LINC01549  -  
EnsemblLINC01549 - [CytoView hg19]  LINC01549 - [CytoView hg38]
Mapping of homologs : NCBILINC01549 [Mapview hg19]  LINC01549 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI420675 BC130500 BC130504 BC144390 BC144391
RefSeq transcript (Entrez)NM_001005521
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01549
Cluster EST : UnigeneHs.46707 [ NCBI ]
CGAP (NCI)Hs.46707
Alternative Splicing GalleryENSG00000232560
Gene ExpressionLINC01549 [ NCBI-GEO ]   LINC01549 [ EBI - ARRAY_EXPRESS ]   LINC01549 [ SEEK ]   LINC01549 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01549 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505929
GTEX Portal (Tissue expression)LINC01549
Human Protein AtlasENSG00000232560-LINC01549 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIU2
Splice isoforms : SwissVarA6NIU2
PhosPhoSitePlusA6NIU2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01549
DMDM Disease mutations100505929
Blocks (Seattle)LINC01549
SuperfamilyA6NIU2
Human Protein Atlas [tissue]ENSG00000232560-LINC01549 [tissue]
Peptide AtlasA6NIU2
IPIIPI00478675   
Protein Interaction databases
DIP (DOE-UCLA)A6NIU2
IntAct (EBI)A6NIU2
FunCoupENSG00000232560
BioGRIDLINC01549
STRING (EMBL)LINC01549
ZODIACLINC01549
Ontologies - Pathways
QuickGOA6NIU2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01549
Atlas of Cancer Signalling NetworkLINC01549
Wikipedia pathwaysLINC01549
Orthology - Evolution
OrthoDB100505929
GeneTree (enSembl)ENSG00000232560
Phylogenetic Trees/Animal Genes : TreeFamLINC01549
HOVERGENA6NIU2
HOGENOMA6NIU2
Homologs : HomoloGeneLINC01549
Homology/Alignments : Family Browser (UCSC)LINC01549
Gene fusions - Rearrangements
Tumor Fusion PortalLINC01549
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01549 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01549
dbVarLINC01549
ClinVarLINC01549
1000_GenomesLINC01549 
Exome Variant ServerLINC01549
ExAC (Exome Aggregation Consortium)ENSG00000232560
GNOMAD BrowserENSG00000232560
Genetic variants : HAPMAP100505929
Genomic Variants (DGV)LINC01549 [DGVbeta]
DECIPHERLINC01549 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01549 
Mutations
ICGC Data PortalLINC01549 
TCGA Data PortalLINC01549 
Broad Tumor PortalLINC01549
OASIS PortalLINC01549 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01549
BioMutasearch LINC01549
DgiDB (Drug Gene Interaction Database)LINC01549
DoCM (Curated mutations)LINC01549 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01549 (select a term)
intoGenLINC01549
Cancer3DLINC01549(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01549
MedgenLINC01549
Genetic Testing Registry LINC01549
NextProtA6NIU2 [Medical]
TSGene100505929
GENETestsLINC01549
Target ValidationLINC01549
Huge Navigator LINC01549 [HugePedia]
snp3D : Map Gene to Disease100505929
BioCentury BCIQLINC01549
ClinGenLINC01549
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505929
Chemical/Pharm GKB GenePA25832
Clinical trialLINC01549
Miscellaneous
canSAR (ICR)LINC01549 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01549
EVEXLINC01549
GoPubMedLINC01549
iHOPLINC01549
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:00 CET 2017

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