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LINC01551 (long intergenic non-protein coding RNA 1551)

Identity

Alias_namesC14orf23
chromosome 14 open reading frame 23
Other aliasc14_5148
HGNC (Hugo) LINC01551
LocusID (NCBI) 387978
Atlas_Id 66087
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 28772704 and ends at 28794794 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01551   19828
Cards
Entrez_Gene (NCBI)LINC01551  387978  long intergenic non-protein coding RNA 1551
AliasesC14orf23; c14_5148
GeneCards (Weizmann)LINC01551
Ensembl hg19 (Hinxton)ENSG00000186960 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186960 [Gene_View]  chr14:28772704-28794794 [Contig_View]  LINC01551 [Vega]
ICGC DataPortalENSG00000186960
TCGA cBioPortalLINC01551
AceView (NCBI)LINC01551
Genatlas (Paris)LINC01551
WikiGenes387978
SOURCE (Princeton)LINC01551
Genetics Home Reference (NIH)LINC01551
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01551  -     chr14:28772704-28794794 +  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01551  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblLINC01551 - 14q12 [CytoView hg19]  LINC01551 - 14q12 [CytoView hg38]
Mapping of homologs : NCBILINC01551 [Mapview hg19]  LINC01551 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI204146 BM839073 BX111279 BX248251
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01551
Cluster EST : UnigeneHs.633254 [ NCBI ]
CGAP (NCI)Hs.633254
Alternative Splicing GalleryENSG00000186960
Gene ExpressionLINC01551 [ NCBI-GEO ]   LINC01551 [ EBI - ARRAY_EXPRESS ]   LINC01551 [ SEEK ]   LINC01551 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01551 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387978
GTEX Portal (Tissue expression)LINC01551
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86U37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86U37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86U37
Splice isoforms : SwissVarQ86U37
PhosPhoSitePlusQ86U37
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01551
DMDM Disease mutations387978
Blocks (Seattle)LINC01551
SuperfamilyQ86U37
Human Protein AtlasENSG00000186960
Peptide AtlasQ86U37
IPIIPI00328626   IPI01022803   IPI01022926   
Protein Interaction databases
DIP (DOE-UCLA)Q86U37
IntAct (EBI)Q86U37
FunCoupENSG00000186960
BioGRIDLINC01551
STRING (EMBL)LINC01551
ZODIACLINC01551
Ontologies - Pathways
QuickGOQ86U37
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01551
Atlas of Cancer Signalling NetworkLINC01551
Wikipedia pathwaysLINC01551
Orthology - Evolution
OrthoDB387978
GeneTree (enSembl)ENSG00000186960
Phylogenetic Trees/Animal Genes : TreeFamLINC01551
HOVERGENQ86U37
HOGENOMQ86U37
Homologs : HomoloGeneLINC01551
Homology/Alignments : Family Browser (UCSC)LINC01551
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01551 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01551
dbVarLINC01551
ClinVarLINC01551
1000_GenomesLINC01551 
Exome Variant ServerLINC01551
ExAC (Exome Aggregation Consortium)LINC01551 (select the gene name)
Genetic variants : HAPMAP387978
Genomic Variants (DGV)LINC01551 [DGVbeta]
DECIPHERLINC01551 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01551 
Mutations
ICGC Data PortalLINC01551 
TCGA Data PortalLINC01551 
Broad Tumor PortalLINC01551
OASIS PortalLINC01551 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01551
BioMutasearch LINC01551
DgiDB (Drug Gene Interaction Database)LINC01551
DoCM (Curated mutations)LINC01551 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01551 (select a term)
intoGenLINC01551
Cancer3DLINC01551(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01551
Genetic Testing Registry LINC01551
NextProtQ86U37 [Medical]
TSGene387978
GENETestsLINC01551
Target ValidationLINC01551
Huge Navigator LINC01551 [HugePedia]
snp3D : Map Gene to Disease387978
BioCentury BCIQLINC01551
ClinGenLINC01551
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387978
Chemical/Pharm GKB GenePA134989176
Clinical trialLINC01551
Miscellaneous
canSAR (ICR)LINC01551 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01551
EVEXLINC01551
GoPubMedLINC01551
iHOPLINC01551
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:14:49 CEST 2017

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