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LINC01552 (long intergenic non-protein coding RNA 1552)

Identity

Other aliasC10orf115
bA215C7.4
HGNC (Hugo) LINC01552
LocusID (NCBI) 387642
Atlas_Id 66088
Location 10p12.2  [Link to chromosome band 10p12]
Location_base_pair Starts at 23492745 and ends at 23528721 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01552   31449
Cards
Entrez_Gene (NCBI)LINC01552  387642  long intergenic non-protein coding RNA 1552
AliasesC10orf115; bA215C7.4
GeneCards (Weizmann)LINC01552
Ensembl hg19 (Hinxton) [Gene_View]  chr10:23492745-23528721 [Contig_View]  LINC01552 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:23492745-23528721 [Contig_View]  LINC01552 [Vega]
TCGA cBioPortalLINC01552
AceView (NCBI)LINC01552
Genatlas (Paris)LINC01552
WikiGenes387642
SOURCE (Princeton)LINC01552
Genetics Home Reference (NIH)LINC01552
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01552  -     chr10:23492745-23528721 -  10p12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01552  -     10p12.2   [Description]    (hg38-Dec_2013)
EnsemblLINC01552 - 10p12.2 [CytoView hg19]  LINC01552 - 10p12.2 [CytoView hg38]
Mapping of homologs : NCBILINC01552 [Mapview hg19]  LINC01552 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM976076 LN608326
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)LINC01552
Cluster EST : UnigeneHs.132442 [ NCBI ]
CGAP (NCI)Hs.132442
Gene ExpressionLINC01552 [ NCBI-GEO ]   LINC01552 [ EBI - ARRAY_EXPRESS ]   LINC01552 [ SEEK ]   LINC01552 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01552 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387642
GTEX Portal (Tissue expression)LINC01552
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5QP74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5QP74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5QP74
Splice isoforms : SwissVarQ5QP74
PhosPhoSitePlusQ5QP74
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01552
DMDM Disease mutations387642
Blocks (Seattle)LINC01552
SuperfamilyQ5QP74
Peptide AtlasQ5QP74
IPIIPI00398877   
Protein Interaction databases
DIP (DOE-UCLA)Q5QP74
IntAct (EBI)Q5QP74
BioGRIDLINC01552
STRING (EMBL)LINC01552
ZODIACLINC01552
Ontologies - Pathways
QuickGOQ5QP74
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01552
Atlas of Cancer Signalling NetworkLINC01552
Wikipedia pathwaysLINC01552
Orthology - Evolution
OrthoDB387642
Phylogenetic Trees/Animal Genes : TreeFamLINC01552
HOVERGENQ5QP74
HOGENOMQ5QP74
Homologs : HomoloGeneLINC01552
Homology/Alignments : Family Browser (UCSC)LINC01552
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01552 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01552
dbVarLINC01552
ClinVarLINC01552
1000_GenomesLINC01552 
Exome Variant ServerLINC01552
ExAC (Exome Aggregation Consortium)LINC01552 (select the gene name)
Genetic variants : HAPMAP387642
Genomic Variants (DGV)LINC01552 [DGVbeta]
DECIPHER (Syndromes)10:23492745-23528721  
CONAN: Copy Number AnalysisLINC01552 
Mutations
ICGC Data PortalLINC01552 
TCGA Data PortalLINC01552 
Broad Tumor PortalLINC01552
OASIS PortalLINC01552 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01552
BioMutasearch LINC01552
DgiDB (Drug Gene Interaction Database)LINC01552
DoCM (Curated mutations)LINC01552 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01552 (select a term)
intoGenLINC01552
Cancer3DLINC01552(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01552
Genetic Testing Registry LINC01552
NextProtQ5QP74 [Medical]
TSGene387642
GENETestsLINC01552
Huge Navigator LINC01552 [HugePedia]
snp3D : Map Gene to Disease387642
BioCentury BCIQLINC01552
ClinGenLINC01552
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387642
Chemical/Pharm GKB GenePA134881230
Clinical trialLINC01552
Miscellaneous
canSAR (ICR)LINC01552 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01552
EVEXLINC01552
GoPubMedLINC01552
iHOPLINC01552
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:14:15 CET 2017

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