Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01553 (long intergenic non-protein coding RNA 1553)

Identity

Alias_namesC10orf40
chromosome 10 open reading frame 40
Alias_symbol (synonym)AC023904.2
Other alias
HGNC (Hugo) LINC01553
LocusID (NCBI) 283025
Atlas_Id 66089
Location 10q21.2  [Link to chromosome band 10q21]
Location_base_pair Starts at 61717975 and ends at 61720671 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01553   23524
Cards
Entrez_Gene (NCBI)LINC01553  283025  long intergenic non-protein coding RNA 1553
AliasesC10orf40
GeneCards (Weizmann)LINC01553
Ensembl hg19 (Hinxton)ENSG00000235931 [Gene_View]  chr10:61717975-61720671 [Contig_View]  LINC01553 [Vega]
Ensembl hg38 (Hinxton)ENSG00000235931 [Gene_View]  chr10:61717975-61720671 [Contig_View]  LINC01553 [Vega]
ICGC DataPortalENSG00000235931
TCGA cBioPortalLINC01553
AceView (NCBI)LINC01553
Genatlas (Paris)LINC01553
WikiGenes283025
SOURCE (Princeton)LINC01553
Genetics Home Reference (NIH)LINC01553
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01553  -     chr10:61717975-61720671 -  10q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01553  -     10q21.2   [Description]    (hg38-Dec_2013)
EnsemblLINC01553 - 10q21.2 [CytoView hg19]  LINC01553 - 10q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01553 [Mapview hg19]  LINC01553 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038741 BC048976 BC119749 BC119750 BC126326
RefSeq transcript (Entrez)NM_001017982
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)LINC01553
Cluster EST : UnigeneHs.522955 [ NCBI ]
CGAP (NCI)Hs.522955
Alternative Splicing GalleryENSG00000235931
Gene ExpressionLINC01553 [ NCBI-GEO ]   LINC01553 [ EBI - ARRAY_EXPRESS ]   LINC01553 [ SEEK ]   LINC01553 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01553 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283025
GTEX Portal (Tissue expression)LINC01553
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01553
DMDM Disease mutations283025
Blocks (Seattle)LINC01553
Human Protein AtlasENSG00000235931
IPIIPI00642266   
Protein Interaction databases
FunCoupENSG00000235931
BioGRIDLINC01553
STRING (EMBL)LINC01553
ZODIACLINC01553
Ontologies - Pathways
Huge Navigator LINC01553 [HugePedia]
snp3D : Map Gene to Disease283025
BioCentury BCIQLINC01553
ClinGenLINC01553
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283025
Chemical/Pharm GKB GenePA134921551
Clinical trialLINC01553
Miscellaneous
canSAR (ICR)LINC01553 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01553
EVEXLINC01553
GoPubMedLINC01553
iHOPLINC01553
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:14:15 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.