Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01553 (long intergenic non-protein coding RNA 1553)

Identity

Alias_namesC10orf40
chromosome 10 open reading frame 40
Alias_symbol (synonym)AC023904.2
Other alias
HGNC (Hugo) LINC01553
LocusID (NCBI) 283025
Atlas_Id 66089
Location 10q21.2  [Link to chromosome band 10q21]
Location_base_pair Starts at 59958217 and ends at 59960913 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01553   23524
Cards
Entrez_Gene (NCBI)LINC01553  283025  long intergenic non-protein coding RNA 1553
AliasesC10orf40
GeneCards (Weizmann)LINC01553
Ensembl hg19 (Hinxton)ENSG00000235931 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235931 [Gene_View]  chr10:59958217-59960913 [Contig_View]  LINC01553 [Vega]
ICGC DataPortalENSG00000235931
TCGA cBioPortalLINC01553
AceView (NCBI)LINC01553
Genatlas (Paris)LINC01553
WikiGenes283025
SOURCE (Princeton)LINC01553
Genetics Home Reference (NIH)LINC01553
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01553  -     chr10:59958217-59960913 -  10q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01553  -     10q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01553 - 10q21.2 [CytoView hg19]  LINC01553 - 10q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01553 [Mapview hg19]  LINC01553 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038741 BC048976 BC119749 BC119750 BC126326
RefSeq transcript (Entrez)NM_001017982
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01553
Cluster EST : UnigeneHs.522955 [ NCBI ]
CGAP (NCI)Hs.522955
Alternative Splicing GalleryENSG00000235931
Gene ExpressionLINC01553 [ NCBI-GEO ]   LINC01553 [ EBI - ARRAY_EXPRESS ]   LINC01553 [ SEEK ]   LINC01553 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01553 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283025
GTEX Portal (Tissue expression)LINC01553
Human Protein AtlasENSG00000235931-LINC01553 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4QN01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4QN01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4QN01
Splice isoforms : SwissVarA4QN01
PhosPhoSitePlusA4QN01
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01553
DMDM Disease mutations283025
Blocks (Seattle)LINC01553
SuperfamilyA4QN01
Human Protein Atlas [tissue]ENSG00000235931-LINC01553 [tissue]
Peptide AtlasA4QN01
IPIIPI00642266   
Protein Interaction databases
DIP (DOE-UCLA)A4QN01
IntAct (EBI)A4QN01
FunCoupENSG00000235931
BioGRIDLINC01553
STRING (EMBL)LINC01553
ZODIACLINC01553
Ontologies - Pathways
QuickGOA4QN01
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01553
Atlas of Cancer Signalling NetworkLINC01553
Wikipedia pathwaysLINC01553
Orthology - Evolution
OrthoDB283025
GeneTree (enSembl)ENSG00000235931
Phylogenetic Trees/Animal Genes : TreeFamLINC01553
HOVERGENA4QN01
HOGENOMA4QN01
Homologs : HomoloGeneLINC01553
Homology/Alignments : Family Browser (UCSC)LINC01553
Gene fusions - Rearrangements
Tumor Fusion PortalLINC01553
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01553 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01553
dbVarLINC01553
ClinVarLINC01553
1000_GenomesLINC01553 
Exome Variant ServerLINC01553
ExAC (Exome Aggregation Consortium)ENSG00000235931
GNOMAD BrowserENSG00000235931
Genetic variants : HAPMAP283025
Genomic Variants (DGV)LINC01553 [DGVbeta]
DECIPHERLINC01553 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01553 
Mutations
ICGC Data PortalLINC01553 
TCGA Data PortalLINC01553 
Broad Tumor PortalLINC01553
OASIS PortalLINC01553 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01553
BioMutasearch LINC01553
DgiDB (Drug Gene Interaction Database)LINC01553
DoCM (Curated mutations)LINC01553 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01553 (select a term)
intoGenLINC01553
Cancer3DLINC01553(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01553
MedgenLINC01553
Genetic Testing Registry LINC01553
NextProtA4QN01 [Medical]
TSGene283025
GENETestsLINC01553
Target ValidationLINC01553
Huge Navigator LINC01553 [HugePedia]
snp3D : Map Gene to Disease283025
BioCentury BCIQLINC01553
ClinGenLINC01553
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283025
Chemical/Pharm GKB GenePA134921551
Clinical trialLINC01553
Miscellaneous
canSAR (ICR)LINC01553 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01553
EVEXLINC01553
GoPubMedLINC01553
iHOPLINC01553
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:21:58 CET 2017

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