Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01554 (long intergenic non-protein coding RNA 1554)

Identity

Alias_namesC5orf27
chromosome 5 open reading frame 27
Alias_symbol (synonym)FLJ38821
FIS
Other alias
HGNC (Hugo) LINC01554
LocusID (NCBI) 202299
Atlas_Id 66090
Location 5q15  [Link to chromosome band 5q15]
Location_base_pair Starts at 95852235 and ends at 95860130 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01554   24687
Cards
Entrez_Gene (NCBI)LINC01554  202299  long intergenic non-protein coding RNA 1554
AliasesC5orf27; FIS
GeneCards (Weizmann)LINC01554
Ensembl hg19 (Hinxton)ENSG00000236882 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236882 [Gene_View]  chr5:95852235-95860130 [Contig_View]  LINC01554 [Vega]
ICGC DataPortalENSG00000236882
TCGA cBioPortalLINC01554
AceView (NCBI)LINC01554
Genatlas (Paris)LINC01554
WikiGenes202299
SOURCE (Princeton)LINC01554
Genetics Home Reference (NIH)LINC01554
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01554  -     chr5:95852235-95860130 +  5q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01554  -     5q15   [Description]    (hg19-Feb_2009)
EnsemblLINC01554 - 5q15 [CytoView hg19]  LINC01554 - 5q15 [CytoView hg38]
Mapping of homologs : NCBILINC01554 [Mapview hg19]  LINC01554 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096140 AK314737 AW206457 AY168789 BC093643
RefSeq transcript (Entrez)NM_175616
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01554
Cluster EST : UnigeneHs.8373 [ NCBI ]
CGAP (NCI)Hs.8373
Alternative Splicing GalleryENSG00000236882
Gene ExpressionLINC01554 [ NCBI-GEO ]   LINC01554 [ EBI - ARRAY_EXPRESS ]   LINC01554 [ SEEK ]   LINC01554 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01554 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202299
GTEX Portal (Tissue expression)LINC01554
Human Protein AtlasENSG00000236882-LINC01554 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ52M75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ52M75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ52M75
Splice isoforms : SwissVarQ52M75
PhosPhoSitePlusQ52M75
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01554
DMDM Disease mutations202299
Blocks (Seattle)LINC01554
SuperfamilyQ52M75
Human Protein Atlas [tissue]ENSG00000236882-LINC01554 [tissue]
Peptide AtlasQ52M75
HPRD16896
IPIIPI00329440   
Protein Interaction databases
DIP (DOE-UCLA)Q52M75
IntAct (EBI)Q52M75
FunCoupENSG00000236882
BioGRIDLINC01554
STRING (EMBL)LINC01554
ZODIACLINC01554
Ontologies - Pathways
QuickGOQ52M75
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01554
Atlas of Cancer Signalling NetworkLINC01554
Wikipedia pathwaysLINC01554
Orthology - Evolution
OrthoDB202299
GeneTree (enSembl)ENSG00000236882
Phylogenetic Trees/Animal Genes : TreeFamLINC01554
HOVERGENQ52M75
HOGENOMQ52M75
Homologs : HomoloGeneLINC01554
Homology/Alignments : Family Browser (UCSC)LINC01554
Gene fusions - Rearrangements
Fusion: Tumor Portal LINC01554
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01554 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01554
dbVarLINC01554
ClinVarLINC01554
1000_GenomesLINC01554 
Exome Variant ServerLINC01554
ExAC (Exome Aggregation Consortium)ENSG00000236882
GNOMAD BrowserENSG00000236882
Genetic variants : HAPMAP202299
Genomic Variants (DGV)LINC01554 [DGVbeta]
DECIPHERLINC01554 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01554 
Mutations
ICGC Data PortalLINC01554 
TCGA Data PortalLINC01554 
Broad Tumor PortalLINC01554
OASIS PortalLINC01554 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01554
BioMutasearch LINC01554
DgiDB (Drug Gene Interaction Database)LINC01554
DoCM (Curated mutations)LINC01554 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01554 (select a term)
intoGenLINC01554
Cancer3DLINC01554(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01554
Genetic Testing Registry LINC01554
NextProtQ52M75 [Medical]
TSGene202299
GENETestsLINC01554
Target ValidationLINC01554
Huge Navigator LINC01554 [HugePedia]
snp3D : Map Gene to Disease202299
BioCentury BCIQLINC01554
ClinGenLINC01554
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202299
Chemical/Pharm GKB GenePA147358661
Clinical trialLINC01554
Miscellaneous
canSAR (ICR)LINC01554 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01554
EVEXLINC01554
GoPubMedLINC01554
iHOPLINC01554
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:38 CET 2017

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