Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01555 (long intergenic non-protein coding RNA 1555)

Identity

Alias_namesC1orf180
chromosome 1 open reading frame 180
Alias_symbol (synonym)FLJ35487
Other alias
HGNC (Hugo) LINC01555
LocusID (NCBI) 439927
Atlas_Id 66091
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 84628230 and ends at 84635020 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01555   26647
Cards
Entrez_Gene (NCBI)LINC01555  439927  long intergenic non-protein coding RNA 1555
AliasesC1orf180
GeneCards (Weizmann)LINC01555
Ensembl hg19 (Hinxton)ENSG00000180869 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180869 [Gene_View]  chr1:84628230-84635020 [Contig_View]  LINC01555 [Vega]
ICGC DataPortalENSG00000180869
TCGA cBioPortalLINC01555
AceView (NCBI)LINC01555
Genatlas (Paris)LINC01555
WikiGenes439927
SOURCE (Princeton)LINC01555
Genetics Home Reference (NIH)LINC01555
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01555  -     chr1:84628230-84635020 -  1p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01555  -     1p22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01555 - 1p22.3 [CytoView hg19]  LINC01555 - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBILINC01555 [Mapview hg19]  LINC01555 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092806 BC137361 BC137362 BC144607 BC171792
RefSeq transcript (Entrez)NM_001033660
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01555
Cluster EST : UnigeneHs.407054 [ NCBI ]
CGAP (NCI)Hs.407054
Alternative Splicing GalleryENSG00000180869
Gene ExpressionLINC01555 [ NCBI-GEO ]   LINC01555 [ EBI - ARRAY_EXPRESS ]   LINC01555 [ SEEK ]   LINC01555 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01555 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439927
GTEX Portal (Tissue expression)LINC01555
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAE3
Splice isoforms : SwissVarQ8NAE3
PhosPhoSitePlusQ8NAE3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01555
DMDM Disease mutations439927
Blocks (Seattle)LINC01555
SuperfamilyQ8NAE3
Human Protein AtlasENSG00000180869
Peptide AtlasQ8NAE3
HPRD08182
IPIIPI00167979   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAE3
IntAct (EBI)Q8NAE3
FunCoupENSG00000180869
BioGRIDLINC01555
STRING (EMBL)LINC01555
ZODIACLINC01555
Ontologies - Pathways
QuickGOQ8NAE3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01555
Atlas of Cancer Signalling NetworkLINC01555
Wikipedia pathwaysLINC01555
Orthology - Evolution
OrthoDB439927
GeneTree (enSembl)ENSG00000180869
Phylogenetic Trees/Animal Genes : TreeFamLINC01555
HOVERGENQ8NAE3
HOGENOMQ8NAE3
Homologs : HomoloGeneLINC01555
Homology/Alignments : Family Browser (UCSC)LINC01555
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01555 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01555
dbVarLINC01555
ClinVarLINC01555
1000_GenomesLINC01555 
Exome Variant ServerLINC01555
ExAC (Exome Aggregation Consortium)LINC01555 (select the gene name)
Genetic variants : HAPMAP439927
Genomic Variants (DGV)LINC01555 [DGVbeta]
DECIPHERLINC01555 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01555 
Mutations
ICGC Data PortalLINC01555 
TCGA Data PortalLINC01555 
Broad Tumor PortalLINC01555
OASIS PortalLINC01555 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01555
BioMutasearch LINC01555
DgiDB (Drug Gene Interaction Database)LINC01555
DoCM (Curated mutations)LINC01555 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01555 (select a term)
intoGenLINC01555
Cancer3DLINC01555(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01555
Genetic Testing Registry LINC01555
NextProtQ8NAE3 [Medical]
TSGene439927
GENETestsLINC01555
Target ValidationLINC01555
Huge Navigator LINC01555 [HugePedia]
snp3D : Map Gene to Disease439927
BioCentury BCIQLINC01555
ClinGenLINC01555
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD439927
Chemical/Pharm GKB GenePA142672428
Clinical trialLINC01555
Miscellaneous
canSAR (ICR)LINC01555 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01555
EVEXLINC01555
GoPubMedLINC01555
iHOPLINC01555
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:59:24 CEST 2017

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