Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01556 (long intergenic non-protein coding RNA 1556)

Identity

Alias_namesC6orf100
chromosome 6 open reading frame 100
Alias_symbol (synonym)dJ25J6.5
Other alias
HGNC (Hugo) LINC01556
LocusID (NCBI) 729583
Atlas_Id 66092
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28943784 and ends at 28944538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01556   21195
Cards
Entrez_Gene (NCBI)LINC01556  729583  long intergenic non-protein coding RNA 1556
AliasesC6orf100; dJ25J6.5
GeneCards (Weizmann)LINC01556
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:28943784-28944538 [Contig_View]  LINC01556 [Vega]
TCGA cBioPortalLINC01556
AceView (NCBI)LINC01556
Genatlas (Paris)LINC01556
WikiGenes729583
SOURCE (Princeton)LINC01556
Genetics Home Reference (NIH)LINC01556
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01556  -     chr6:28943784-28944538 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01556  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01556 - 6p22.1 [CytoView hg19]  LINC01556 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBILINC01556 [Mapview hg19]  LINC01556 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX118328 R07702
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)LINC01556
Cluster EST : UnigeneHs.453549 [ NCBI ]
CGAP (NCI)Hs.453549
Gene ExpressionLINC01556 [ NCBI-GEO ]   LINC01556 [ EBI - ARRAY_EXPRESS ]   LINC01556 [ SEEK ]   LINC01556 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01556 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729583
GTEX Portal (Tissue expression)LINC01556
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQF7
Splice isoforms : SwissVarQ5JQF7
PhosPhoSitePlusQ5JQF7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01556
DMDM Disease mutations729583
Blocks (Seattle)LINC01556
SuperfamilyQ5JQF7
Peptide AtlasQ5JQF7
IPIIPI00307008   
Protein Interaction databases
DIP (DOE-UCLA)Q5JQF7
IntAct (EBI)Q5JQF7
BioGRIDLINC01556
STRING (EMBL)LINC01556
ZODIACLINC01556
Ontologies - Pathways
QuickGOQ5JQF7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01556
Atlas of Cancer Signalling NetworkLINC01556
Wikipedia pathwaysLINC01556
Orthology - Evolution
OrthoDB729583
Phylogenetic Trees/Animal Genes : TreeFamLINC01556
HOVERGENQ5JQF7
HOGENOMQ5JQF7
Homologs : HomoloGeneLINC01556
Homology/Alignments : Family Browser (UCSC)LINC01556
Gene fusions - Rearrangements
Fusion : QuiverLINC01556
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01556 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01556
dbVarLINC01556
ClinVarLINC01556
1000_GenomesLINC01556 
Exome Variant ServerLINC01556
Varsome BrowserLINC01556
Genetic variants : HAPMAP729583
Genomic Variants (DGV)LINC01556 [DGVbeta]
DECIPHERLINC01556 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01556 
Mutations
ICGC Data PortalLINC01556 
TCGA Data PortalLINC01556 
Broad Tumor PortalLINC01556
OASIS PortalLINC01556 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01556
BioMutasearch LINC01556
DgiDB (Drug Gene Interaction Database)LINC01556
DoCM (Curated mutations)LINC01556 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01556 (select a term)
intoGenLINC01556
Cancer3DLINC01556(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01556
MedgenLINC01556
Genetic Testing Registry LINC01556
NextProtQ5JQF7 [Medical]
TSGene729583
GENETestsLINC01556
Target ValidationLINC01556
Huge Navigator LINC01556 [HugePedia]
snp3D : Map Gene to Disease729583
BioCentury BCIQLINC01556
ClinGenLINC01556
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729583
Chemical/Pharm GKB GenePA134988098
Clinical trialLINC01556
Miscellaneous
canSAR (ICR)LINC01556 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01556
EVEXLINC01556
GoPubMedLINC01556
iHOPLINC01556
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:55:21 CEST 2018

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