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LINC01558 (long intergenic non-protein coding RNA 1558)

Identity

Alias_namesC6orf123
LINC01557
chromosome 6 open reading frame 123
long intergenic non-protein coding RNA 1557
Alias_symbol (synonym)HGC6.2
dJ431P23.4
Other alias
HGNC (Hugo) LINC01558
LocusID (NCBI) 26238
Atlas_Id 66093
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 167786820 and ends at 167796846 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01558   21235
Cards
Entrez_Gene (NCBI)LINC01558  26238  long intergenic non-protein coding RNA 1558
AliasesC6orf123; HGC6.2; LINC01557; dJ431P23.4
GeneCards (Weizmann)LINC01558
Ensembl hg19 (Hinxton)ENSG00000146521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146521 [Gene_View]  ENSG00000146521 [Sequence]  chr6:167786820-167796846 [Contig_View]  LINC01558 [Vega]
ICGC DataPortalENSG00000146521
TCGA cBioPortalLINC01558
AceView (NCBI)LINC01558
Genatlas (Paris)LINC01558
WikiGenes26238
SOURCE (Princeton)LINC01558
Genetics Home Reference (NIH)LINC01558
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01558  -     chr6:167786820-167796846 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01558  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblLINC01558 - 6q27 [CytoView hg19]  LINC01558 - 6q27 [CytoView hg38]
Mapping of homologs : NCBILINC01558 [Mapview hg19]  LINC01558 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB016901 BC027853
RefSeq transcript (Entrez)NM_014356
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01558
Cluster EST : UnigeneHs.520583 [ NCBI ]
CGAP (NCI)Hs.520583
Alternative Splicing GalleryENSG00000146521
Gene ExpressionLINC01558 [ NCBI-GEO ]   LINC01558 [ EBI - ARRAY_EXPRESS ]   LINC01558 [ SEEK ]   LINC01558 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01558 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26238
GTEX Portal (Tissue expression)LINC01558
Human Protein AtlasENSG00000146521-LINC01558 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6Z2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6Z2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6Z2
Splice isoforms : SwissVarQ9Y6Z2
PhosPhoSitePlusQ9Y6Z2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01558
DMDM Disease mutations26238
Blocks (Seattle)LINC01558
SuperfamilyQ9Y6Z2
Human Protein Atlas [tissue]ENSG00000146521-LINC01558 [tissue]
Peptide AtlasQ9Y6Z2
HPRD12846
IPIIPI00002692   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6Z2
IntAct (EBI)Q9Y6Z2
FunCoupENSG00000146521
BioGRIDLINC01558
STRING (EMBL)LINC01558
ZODIACLINC01558
Ontologies - Pathways
QuickGOQ9Y6Z2
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkLINC01558
Atlas of Cancer Signalling NetworkLINC01558
Wikipedia pathwaysLINC01558
Orthology - Evolution
OrthoDB26238
GeneTree (enSembl)ENSG00000146521
Phylogenetic Trees/Animal Genes : TreeFamLINC01558
HOVERGENQ9Y6Z2
HOGENOMQ9Y6Z2
Homologs : HomoloGeneLINC01558
Homology/Alignments : Family Browser (UCSC)LINC01558
Gene fusions - Rearrangements
Fusion : QuiverLINC01558
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01558 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01558
dbVarLINC01558
ClinVarLINC01558
1000_GenomesLINC01558 
Exome Variant ServerLINC01558
ExAC (Exome Aggregation Consortium)ENSG00000146521
GNOMAD BrowserENSG00000146521
Varsome BrowserLINC01558
Genetic variants : HAPMAP26238
Genomic Variants (DGV)LINC01558 [DGVbeta]
DECIPHERLINC01558 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01558 
Mutations
ICGC Data PortalLINC01558 
TCGA Data PortalLINC01558 
Broad Tumor PortalLINC01558
OASIS PortalLINC01558 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01558
BioMutasearch LINC01558
DgiDB (Drug Gene Interaction Database)LINC01558
DoCM (Curated mutations)LINC01558 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01558 (select a term)
intoGenLINC01558
Cancer3DLINC01558(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01558
MedgenLINC01558
Genetic Testing Registry LINC01558
NextProtQ9Y6Z2 [Medical]
TSGene26238
GENETestsLINC01558
Target ValidationLINC01558
Huge Navigator LINC01558 [HugePedia]
snp3D : Map Gene to Disease26238
BioCentury BCIQLINC01558
ClinGenLINC01558
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26238
Chemical/Pharm GKB GenePA134952658
Clinical trialLINC01558
Miscellaneous
canSAR (ICR)LINC01558 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01558
EVEXLINC01558
GoPubMedLINC01558
iHOPLINC01558
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:55:21 CEST 2018

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