Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01559 (long intergenic non-protein coding RNA 1559)

Identity

Alias_namesC12orf36
chromosome 12 open reading frame 36
Alias_symbol (synonym)FLJ33810
Other alias
HGNC (Hugo) LINC01559
LocusID (NCBI) 283422
Atlas_Id 66094
Location 12p13.1  [Link to chromosome band 12p13]
Location_base_pair Starts at 13371089 and ends at 13376711 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01559   26598
Cards
Entrez_Gene (NCBI)LINC01559  283422  long intergenic non-protein coding RNA 1559
AliasesC12orf36
GeneCards (Weizmann)LINC01559
Ensembl hg19 (Hinxton)ENSG00000180861 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180861 [Gene_View]  chr12:13371089-13376711 [Contig_View]  LINC01559 [Vega]
ICGC DataPortalENSG00000180861
TCGA cBioPortalLINC01559
AceView (NCBI)LINC01559
Genatlas (Paris)LINC01559
WikiGenes283422
SOURCE (Princeton)LINC01559
Genetics Home Reference (NIH)LINC01559
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01559  -     chr12:13371089-13376711 -  12p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01559  -     12p13.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01559 - 12p13.1 [CytoView hg19]  LINC01559 - 12p13.1 [CytoView hg38]
Mapping of homologs : NCBILINC01559 [Mapview hg19]  LINC01559 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091129 AK307179 BC101220 BC101222 BC101223
RefSeq transcript (Entrez)NM_182558
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01559
Cluster EST : UnigeneHs.448717 [ NCBI ]
CGAP (NCI)Hs.448717
Alternative Splicing GalleryENSG00000180861
Gene ExpressionLINC01559 [ NCBI-GEO ]   LINC01559 [ EBI - ARRAY_EXPRESS ]   LINC01559 [ SEEK ]   LINC01559 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01559 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283422
GTEX Portal (Tissue expression)LINC01559
Human Protein AtlasENSG00000180861-LINC01559 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495D7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495D7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495D7
Splice isoforms : SwissVarQ495D7
PhosPhoSitePlusQ495D7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01559
DMDM Disease mutations283422
Blocks (Seattle)LINC01559
SuperfamilyQ495D7
Human Protein Atlas [tissue]ENSG00000180861-LINC01559 [tissue]
Peptide AtlasQ495D7
HPRD08166
IPIIPI00296005   IPI01014770   IPI01013922   
Protein Interaction databases
DIP (DOE-UCLA)Q495D7
IntAct (EBI)Q495D7
FunCoupENSG00000180861
BioGRIDLINC01559
STRING (EMBL)LINC01559
ZODIACLINC01559
Ontologies - Pathways
QuickGOQ495D7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01559
Atlas of Cancer Signalling NetworkLINC01559
Wikipedia pathwaysLINC01559
Orthology - Evolution
OrthoDB283422
GeneTree (enSembl)ENSG00000180861
Phylogenetic Trees/Animal Genes : TreeFamLINC01559
HOVERGENQ495D7
HOGENOMQ495D7
Homologs : HomoloGeneLINC01559
Homology/Alignments : Family Browser (UCSC)LINC01559
Gene fusions - Rearrangements
Fusion: Tumor Portal LINC01559
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01559 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01559
dbVarLINC01559
ClinVarLINC01559
1000_GenomesLINC01559 
Exome Variant ServerLINC01559
ExAC (Exome Aggregation Consortium)ENSG00000180861
GNOMAD BrowserENSG00000180861
Genetic variants : HAPMAP283422
Genomic Variants (DGV)LINC01559 [DGVbeta]
DECIPHERLINC01559 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01559 
Mutations
ICGC Data PortalLINC01559 
TCGA Data PortalLINC01559 
Broad Tumor PortalLINC01559
OASIS PortalLINC01559 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01559
BioMutasearch LINC01559
DgiDB (Drug Gene Interaction Database)LINC01559
DoCM (Curated mutations)LINC01559 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01559 (select a term)
intoGenLINC01559
Cancer3DLINC01559(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01559
Genetic Testing Registry LINC01559
NextProtQ495D7 [Medical]
TSGene283422
GENETestsLINC01559
Target ValidationLINC01559
Huge Navigator LINC01559 [HugePedia]
snp3D : Map Gene to Disease283422
BioCentury BCIQLINC01559
ClinGenLINC01559
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283422
Chemical/Pharm GKB GenePA143485366
Clinical trialLINC01559
Miscellaneous
canSAR (ICR)LINC01559 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01559
EVEXLINC01559
GoPubMedLINC01559
iHOPLINC01559
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:39 CET 2017

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