Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01560 (long intergenic non-protein coding RNA 1560)

Identity

Alias_namesCXorf24
chromosome X open reading frame 24
Other alias
HGNC (Hugo) LINC01560
LocusID (NCBI) 203414
Atlas_Id 66095
Location Xp11.3  [Link to chromosome band Xp11]
Location_base_pair Starts at 47482716 and ends at 47485227 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01560   27333
Cards
Entrez_Gene (NCBI)LINC01560  203414  long intergenic non-protein coding RNA 1560
AliasesCXorf24
GeneCards (Weizmann)LINC01560
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:47482716-47485227 [Contig_View]  LINC01560 [Vega]
TCGA cBioPortalLINC01560
AceView (NCBI)LINC01560
Genatlas (Paris)LINC01560
WikiGenes203414
SOURCE (Princeton)LINC01560
Genetics Home Reference (NIH)LINC01560
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01560  -     chrX:47482716-47485227 +  Xp11.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01560  -     Xp11.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01560 - Xp11.3 [CytoView hg19]  LINC01560 - Xp11.3 [CytoView hg38]
Mapping of homologs : NCBILINC01560 [Mapview hg19]  LINC01560 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC025179 CA427930 DA866999 DB481712 HY147632
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01560
Cluster EST : UnigeneHs.597617 [ NCBI ]
CGAP (NCI)Hs.597617
Gene ExpressionLINC01560 [ NCBI-GEO ]   LINC01560 [ EBI - ARRAY_EXPRESS ]   LINC01560 [ SEEK ]   LINC01560 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01560 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203414
GTEX Portal (Tissue expression)LINC01560
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB33
Splice isoforms : SwissVarQ8TB33
PhosPhoSitePlusQ8TB33
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01560
DMDM Disease mutations203414
Blocks (Seattle)LINC01560
SuperfamilyQ8TB33
Peptide AtlasQ8TB33
IPIIPI00382795   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB33
IntAct (EBI)Q8TB33
BioGRIDLINC01560
STRING (EMBL)LINC01560
ZODIACLINC01560
Ontologies - Pathways
QuickGOQ8TB33
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01560
Atlas of Cancer Signalling NetworkLINC01560
Wikipedia pathwaysLINC01560
Orthology - Evolution
OrthoDB203414
Phylogenetic Trees/Animal Genes : TreeFamLINC01560
HOVERGENQ8TB33
HOGENOMQ8TB33
Homologs : HomoloGeneLINC01560
Homology/Alignments : Family Browser (UCSC)LINC01560
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01560 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01560
dbVarLINC01560
ClinVarLINC01560
1000_GenomesLINC01560 
Exome Variant ServerLINC01560
ExAC (Exome Aggregation Consortium)LINC01560 (select the gene name)
Genetic variants : HAPMAP203414
Genomic Variants (DGV)LINC01560 [DGVbeta]
DECIPHERLINC01560 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01560 
Mutations
ICGC Data PortalLINC01560 
TCGA Data PortalLINC01560 
Broad Tumor PortalLINC01560
OASIS PortalLINC01560 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01560
BioMutasearch LINC01560
DgiDB (Drug Gene Interaction Database)LINC01560
DoCM (Curated mutations)LINC01560 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01560 (select a term)
intoGenLINC01560
Cancer3DLINC01560(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01560
Genetic Testing Registry LINC01560
NextProtQ8TB33 [Medical]
TSGene203414
GENETestsLINC01560
Target ValidationLINC01560
Huge Navigator LINC01560 [HugePedia]
snp3D : Map Gene to Disease203414
BioCentury BCIQLINC01560
ClinGenLINC01560
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203414
Chemical/Pharm GKB GenePA134918026
Clinical trialLINC01560
Miscellaneous
canSAR (ICR)LINC01560 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01560
EVEXLINC01560
GoPubMedLINC01560
iHOPLINC01560
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:59:25 CEST 2017

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