Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01561 (long intergenic non-protein coding RNA 1561)

Identity

Alias_namesC10orf85
chromosome 10 open reading frame 85
Alias_symbol (synonym)FLJ37402
Em:AC023282.2
Other alias
HGNC (Hugo) LINC01561
LocusID (NCBI) 404216
Atlas_Id 66096
Location 10q26.12  [Link to chromosome band 10q26]
Location_base_pair Starts at 122357721 and ends at 122359629 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01561   31365
Cards
Entrez_Gene (NCBI)LINC01561  404216  long intergenic non-protein coding RNA 1561
AliasesC10orf85
GeneCards (Weizmann)LINC01561
Ensembl hg19 (Hinxton)ENSG00000177234 [Gene_View]  chr10:122357721-122359629 [Contig_View]  LINC01561 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177234 [Gene_View]  chr10:122357721-122359629 [Contig_View]  LINC01561 [Vega]
ICGC DataPortalENSG00000177234
TCGA cBioPortalLINC01561
AceView (NCBI)LINC01561
Genatlas (Paris)LINC01561
WikiGenes404216
SOURCE (Princeton)LINC01561
Genetics Home Reference (NIH)LINC01561
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01561  -     chr10:122357721-122359629 +  10q26.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01561  -     10q26.12   [Description]    (hg38-Dec_2013)
EnsemblLINC01561 - 10q26.12 [CytoView hg19]  LINC01561 - 10q26.12 [CytoView hg38]
Mapping of homologs : NCBILINC01561 [Mapview hg19]  LINC01561 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094721 AW013915 BC108662 LN608361
RefSeq transcript (Entrez)NM_001012711
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)LINC01561
Cluster EST : UnigeneHs.196578 [ NCBI ]
CGAP (NCI)Hs.196578
Alternative Splicing GalleryENSG00000177234
Gene ExpressionLINC01561 [ NCBI-GEO ]   LINC01561 [ EBI - ARRAY_EXPRESS ]   LINC01561 [ SEEK ]   LINC01561 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01561 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404216
GTEX Portal (Tissue expression)LINC01561
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1V8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1V8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1V8
Splice isoforms : SwissVarQ8N1V8
PhosPhoSitePlusQ8N1V8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01561
DMDM Disease mutations404216
Blocks (Seattle)LINC01561
SuperfamilyQ8N1V8
Human Protein AtlasENSG00000177234
Peptide AtlasQ8N1V8
HPRD18530
IPIIPI00166294   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1V8
IntAct (EBI)Q8N1V8
FunCoupENSG00000177234
BioGRIDLINC01561
STRING (EMBL)LINC01561
ZODIACLINC01561
Ontologies - Pathways
QuickGOQ8N1V8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01561
Atlas of Cancer Signalling NetworkLINC01561
Wikipedia pathwaysLINC01561
Orthology - Evolution
OrthoDB404216
GeneTree (enSembl)ENSG00000177234
Phylogenetic Trees/Animal Genes : TreeFamLINC01561
HOVERGENQ8N1V8
HOGENOMQ8N1V8
Homologs : HomoloGeneLINC01561
Homology/Alignments : Family Browser (UCSC)LINC01561
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01561 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01561
dbVarLINC01561
ClinVarLINC01561
1000_GenomesLINC01561 
Exome Variant ServerLINC01561
ExAC (Exome Aggregation Consortium)LINC01561 (select the gene name)
Genetic variants : HAPMAP404216
Genomic Variants (DGV)LINC01561 [DGVbeta]
DECIPHER (Syndromes)10:122357721-122359629  ENSG00000177234
CONAN: Copy Number AnalysisLINC01561 
Mutations
ICGC Data PortalLINC01561 
TCGA Data PortalLINC01561 
Broad Tumor PortalLINC01561
OASIS PortalLINC01561 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01561
BioMutasearch LINC01561
DgiDB (Drug Gene Interaction Database)LINC01561
DoCM (Curated mutations)LINC01561 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01561 (select a term)
intoGenLINC01561
Cancer3DLINC01561(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01561
Genetic Testing Registry LINC01561
NextProtQ8N1V8 [Medical]
TSGene404216
GENETestsLINC01561
Huge Navigator LINC01561 [HugePedia]
snp3D : Map Gene to Disease404216
BioCentury BCIQLINC01561
ClinGenLINC01561
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404216
Chemical/Pharm GKB GenePA134868805
Clinical trialLINC01561
Miscellaneous
canSAR (ICR)LINC01561 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01561
EVEXLINC01561
GoPubMedLINC01561
iHOPLINC01561
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:14:17 CET 2017

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