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LINC01563 (long intergenic non-protein coding RNA 1563)

Identity

Other aliasHP08942
HGNC (Hugo) LINC01563
LocusID (NCBI) 101060544
Atlas_Id 66098
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 21075556 and ends at 21090613 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01563   51343
Cards
Entrez_Gene (NCBI)LINC01563  101060544  long intergenic non-protein coding RNA 1563
AliasesHP08942
GeneCards (Weizmann)LINC01563
Ensembl hg19 (Hinxton)ENSG00000236819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236819 [Gene_View]  chr17:21075556-21090613 [Contig_View]  LINC01563 [Vega]
ICGC DataPortalENSG00000236819
TCGA cBioPortalLINC01563
AceView (NCBI)LINC01563
Genatlas (Paris)LINC01563
WikiGenes101060544
SOURCE (Princeton)LINC01563
Genetics Home Reference (NIH)LINC01563
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01563  -     chr17:21075556-21090613 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01563  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01563 - 17p11.2 [CytoView hg19]  LINC01563 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBILINC01563 [Mapview hg19]  LINC01563 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593144 AV723259
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01563
Cluster EST : UnigeneHs.585812 [ NCBI ]
CGAP (NCI)Hs.585812
Alternative Splicing GalleryENSG00000236819
Gene ExpressionLINC01563 [ NCBI-GEO ]   LINC01563 [ EBI - ARRAY_EXPRESS ]   LINC01563 [ SEEK ]   LINC01563 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01563 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101060544
GTEX Portal (Tissue expression)LINC01563
Human Protein AtlasENSG00000236819-LINC01563 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01563
DMDM Disease mutations101060544
Blocks (Seattle)LINC01563
Human Protein Atlas [tissue]ENSG00000236819-LINC01563 [tissue]
Protein Interaction databases
FunCoupENSG00000236819
BioGRIDLINC01563
STRING (EMBL)LINC01563
ZODIACLINC01563
Ontologies - Pathways
Huge Navigator LINC01563 [HugePedia]
snp3D : Map Gene to Disease101060544
BioCentury BCIQLINC01563
ClinGenLINC01563
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101060544
Clinical trialLINC01563
Miscellaneous
canSAR (ICR)LINC01563 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01563
EVEXLINC01563
GoPubMedLINC01563
iHOPLINC01563
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:40 CET 2017

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