Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01564 (long intergenic non-protein coding RNA 1564)

Identity

Alias_symbol (synonym)TCONS_00011314
Other aliasXLOC_005327
HGNC (Hugo) LINC01564
LocusID (NCBI) 101927171
Atlas_Id 66099
Location 6p12.1  [Link to chromosome band 6p12]
Location_base_pair Starts at 53628380 and ends at 53631394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01564   51361
Cards
Entrez_Gene (NCBI)LINC01564  101927171  long intergenic non-protein coding RNA 1564
AliasesTCONS_00011314; XLOC_005327
GeneCards (Weizmann)LINC01564
Ensembl hg19 (Hinxton)ENSG00000235899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235899 [Gene_View]  chr6:53628380-53631394 [Contig_View]  LINC01564 [Vega]
ICGC DataPortalENSG00000235899
TCGA cBioPortalLINC01564
AceView (NCBI)LINC01564
Genatlas (Paris)LINC01564
WikiGenes101927171
SOURCE (Princeton)LINC01564
Genetics Home Reference (NIH)LINC01564
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01564  -     chr6:53628380-53631394 +  6p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01564  -     6p12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01564 - 6p12.1 [CytoView hg19]  LINC01564 - 6p12.1 [CytoView hg38]
Mapping of homologs : NCBILINC01564 [Mapview hg19]  LINC01564 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI829924
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01564
Cluster EST : UnigeneHs.334005 [ NCBI ]
CGAP (NCI)Hs.334005
Alternative Splicing GalleryENSG00000235899
Gene ExpressionLINC01564 [ NCBI-GEO ]   LINC01564 [ EBI - ARRAY_EXPRESS ]   LINC01564 [ SEEK ]   LINC01564 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01564 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927171
GTEX Portal (Tissue expression)LINC01564
Human Protein AtlasENSG00000235899-LINC01564 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01564
DMDM Disease mutations101927171
Blocks (Seattle)LINC01564
Human Protein Atlas [tissue]ENSG00000235899-LINC01564 [tissue]
Protein Interaction databases
FunCoupENSG00000235899
BioGRIDLINC01564
STRING (EMBL)LINC01564
ZODIACLINC01564
Ontologies - Pathways
Huge Navigator LINC01564 [HugePedia]
snp3D : Map Gene to Disease101927171
BioCentury BCIQLINC01564
ClinGenLINC01564
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927171
Clinical trialLINC01564
Miscellaneous
canSAR (ICR)LINC01564 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01564
EVEXLINC01564
GoPubMedLINC01564
iHOPLINC01564
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:26:14 CET 2018

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