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LINC01564 (long intergenic non-protein coding RNA 1564)

Identity

Alias (NCBI)TCONS_00011314
XLOC_005327
HGNC (Hugo) LINC01564
HGNC Alias symbTCONS_00011314
LocusID (NCBI) 101927171
Atlas_Id 66099
Location 6p12.1  [Link to chromosome band 6p12]
Location_base_pair Starts at 53628380 and ends at 53631394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC01564   51361
Cards
Entrez_Gene (NCBI)LINC01564    long intergenic non-protein coding RNA 1564
AliasesTCONS_00011314; XLOC_005327
GeneCards (Weizmann)LINC01564
Ensembl hg19 (Hinxton)ENSG00000235899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235899 [Gene_View]  ENSG00000235899 [Sequence]  chr6:53628380-53631394 [Contig_View]  LINC01564 [Vega]
ICGC DataPortalENSG00000235899
TCGA cBioPortalLINC01564
AceView (NCBI)LINC01564
Genatlas (Paris)LINC01564
SOURCE (Princeton)LINC01564
Genetics Home Reference (NIH)LINC01564
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01564  -     chr6:53628380-53631394 +  6p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01564  -     6p12.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01564 - 6p12.1 [CytoView hg19]  LINC01564 - 6p12.1 [CytoView hg38]
ImmunoBaseENSG00000235899
Genome Data Viewer NCBILINC01564 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI829924
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01564
Gene ExpressionLINC01564 [ NCBI-GEO ]   LINC01564 [ EBI - ARRAY_EXPRESS ]   LINC01564 [ SEEK ]   LINC01564 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01564 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01564 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101927171
GTEX Portal (Tissue expression)LINC01564
Human Protein AtlasENSG00000235899-LINC01564 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01564
Human Protein Atlas [tissue]ENSG00000235899-LINC01564 [tissue]
Protein Interaction databases
BioGRIDLINC01564
STRING (EMBL)LINC01564
ZODIACLINC01564
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC01564
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:58:10 CEST 2021

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