Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01564 (long intergenic non-protein coding RNA 1564)


Alias (NCBI)TCONS_00011314
HGNC (Hugo) LINC01564
HGNC Alias symbTCONS_00011314
LocusID (NCBI) 101927171
Atlas_Id 66099
Location 6p12.1  [Link to chromosome band 6p12]
Location_base_pair Starts at 53628380 and ends at 53631394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01564   51361
Entrez_Gene (NCBI)LINC01564    long intergenic non-protein coding RNA 1564
AliasesTCONS_00011314; XLOC_005327
GeneCards (Weizmann)LINC01564
Ensembl hg19 (Hinxton)ENSG00000235899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235899 [Gene_View]  ENSG00000235899 [Sequence]  chr6:53628380-53631394 [Contig_View]  LINC01564 [Vega]
ICGC DataPortalENSG00000235899
TCGA cBioPortalLINC01564
AceView (NCBI)LINC01564
Genatlas (Paris)LINC01564
SOURCE (Princeton)LINC01564
Genetics Home Reference (NIH)LINC01564
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01564  -     chr6:53628380-53631394 +  6p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01564  -     6p12.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01564 - 6p12.1 [CytoView hg19]  LINC01564 - 6p12.1 [CytoView hg38]
Genome Data Viewer NCBILINC01564 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI829924
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01564
Gene ExpressionLINC01564 [ NCBI-GEO ]   LINC01564 [ EBI - ARRAY_EXPRESS ]   LINC01564 [ SEEK ]   LINC01564 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01564 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01564 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101927171
GTEX Portal (Tissue expression)LINC01564
Human Protein AtlasENSG00000235899-LINC01564 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01564
Human Protein Atlas [tissue]ENSG00000235899-LINC01564 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:58:10 CEST 2021

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