Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01565 (long intergenic non-protein coding RNA 1565)

Identity

Alias_namesC3orf27
chromosome 3 open reading frame 27
Alias_symbol (synonym)GR6
Other alias
HGNC (Hugo) LINC01565
LocusID (NCBI) 23434
Atlas_Id 52974
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 128572000 and ends at 128576086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LINC01565 (3q21.3) / MECOM (3q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01565   17099
Cards
Entrez_Gene (NCBI)LINC01565  23434  long intergenic non-protein coding RNA 1565
AliasesC3orf27; GR6
GeneCards (Weizmann)LINC01565
Ensembl hg19 (Hinxton)ENSG00000198685 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198685 [Gene_View]  chr3:128572000-128576086 [Contig_View]  LINC01565 [Vega]
ICGC DataPortalENSG00000198685
TCGA cBioPortalLINC01565
AceView (NCBI)LINC01565
Genatlas (Paris)LINC01565
WikiGenes23434
SOURCE (Princeton)LINC01565
Genetics Home Reference (NIH)LINC01565
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01565  -     chr3:128572000-128576086 -  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01565  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01565 - 3q21.3 [CytoView hg19]  LINC01565 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC01565 [Mapview hg19]  LINC01565 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF008192 BC140211 BC146513
RefSeq transcript (Entrez)NM_007354
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01565
Cluster EST : UnigeneHs.194283 [ NCBI ]
CGAP (NCI)Hs.194283
Alternative Splicing GalleryENSG00000198685
Gene ExpressionLINC01565 [ NCBI-GEO ]   LINC01565 [ EBI - ARRAY_EXPRESS ]   LINC01565 [ SEEK ]   LINC01565 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01565 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23434
GTEX Portal (Tissue expression)LINC01565
Human Protein AtlasENSG00000198685-LINC01565 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15544   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15544  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15544
Splice isoforms : SwissVarO15544
PhosPhoSitePlusO15544
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01565
DMDM Disease mutations23434
Blocks (Seattle)LINC01565
SuperfamilyO15544
Human Protein Atlas [tissue]ENSG00000198685-LINC01565 [tissue]
Peptide AtlasO15544
HPRD13607
IPIIPI00007348   
Protein Interaction databases
DIP (DOE-UCLA)O15544
IntAct (EBI)O15544
FunCoupENSG00000198685
BioGRIDLINC01565
STRING (EMBL)LINC01565
ZODIACLINC01565
Ontologies - Pathways
QuickGOO15544
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01565
Atlas of Cancer Signalling NetworkLINC01565
Wikipedia pathwaysLINC01565
Orthology - Evolution
OrthoDB23434
GeneTree (enSembl)ENSG00000198685
Phylogenetic Trees/Animal Genes : TreeFamLINC01565
HOVERGENO15544
HOGENOMO15544
Homologs : HomoloGeneLINC01565
Homology/Alignments : Family Browser (UCSC)LINC01565
Gene fusions - Rearrangements
Fusion : MitelmanLINC01565/MECOM [3q21.3/3q26.2]  
Tumor Fusion PortalLINC01565
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01565 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01565
dbVarLINC01565
ClinVarLINC01565
1000_GenomesLINC01565 
Exome Variant ServerLINC01565
ExAC (Exome Aggregation Consortium)ENSG00000198685
GNOMAD BrowserENSG00000198685
Genetic variants : HAPMAP23434
Genomic Variants (DGV)LINC01565 [DGVbeta]
DECIPHERLINC01565 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01565 
Mutations
ICGC Data PortalLINC01565 
TCGA Data PortalLINC01565 
Broad Tumor PortalLINC01565
OASIS PortalLINC01565 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01565
BioMutasearch LINC01565
DgiDB (Drug Gene Interaction Database)LINC01565
DoCM (Curated mutations)LINC01565 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01565 (select a term)
intoGenLINC01565
Cancer3DLINC01565(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01565
MedgenLINC01565
Genetic Testing Registry LINC01565
NextProtO15544 [Medical]
TSGene23434
GENETestsLINC01565
Target ValidationLINC01565
Huge Navigator LINC01565 [HugePedia]
snp3D : Map Gene to Disease23434
BioCentury BCIQLINC01565
ClinGenLINC01565
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23434
Chemical/Pharm GKB GenePA142672388
Clinical trialLINC01565
Miscellaneous
canSAR (ICR)LINC01565 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01565
EVEXLINC01565
GoPubMedLINC01565
iHOPLINC01565
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:20:02 CET 2017

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