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LINC01567 (long intergenic non-protein coding RNA 1567)

Identity

Other alias-
HGNC (Hugo) LINC01567
LocusID (NCBI) 400511
Atlas_Id 66102
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 24661422 and ends at 24671062 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01567   51367
Cards
Entrez_Gene (NCBI)LINC01567  400511  long intergenic non-protein coding RNA 1567
Aliases
GeneCards (Weizmann)LINC01567
Ensembl hg19 (Hinxton)ENSG00000224310 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224310 [Gene_View]  chr16:24661422-24671062 [Contig_View]  LINC01567 [Vega]
ICGC DataPortalENSG00000224310
TCGA cBioPortalLINC01567
AceView (NCBI)LINC01567
Genatlas (Paris)LINC01567
WikiGenes400511
SOURCE (Princeton)LINC01567
Genetics Home Reference (NIH)LINC01567
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01567  -     chr16:24661422-24671062 -  16p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01567  -     16p12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01567 - 16p12.1 [CytoView hg19]  LINC01567 - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBILINC01567 [Mapview hg19]  LINC01567 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127191 BC132761 BC132789
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01567
Cluster EST : UnigeneHs.592028 [ NCBI ]
CGAP (NCI)Hs.592028
Alternative Splicing GalleryENSG00000224310
Gene ExpressionLINC01567 [ NCBI-GEO ]   LINC01567 [ EBI - ARRAY_EXPRESS ]   LINC01567 [ SEEK ]   LINC01567 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01567 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400511
GTEX Portal (Tissue expression)LINC01567
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSR6
Splice isoforms : SwissVarQ6ZSR6
PhosPhoSitePlusQ6ZSR6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01567
DMDM Disease mutations400511
Blocks (Seattle)LINC01567
SuperfamilyQ6ZSR6
Human Protein AtlasENSG00000224310
Peptide AtlasQ6ZSR6
HPRD16985
IPIIPI00410518   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSR6
IntAct (EBI)Q6ZSR6
FunCoupENSG00000224310
BioGRIDLINC01567
STRING (EMBL)LINC01567
ZODIACLINC01567
Ontologies - Pathways
QuickGOQ6ZSR6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01567
Atlas of Cancer Signalling NetworkLINC01567
Wikipedia pathwaysLINC01567
Orthology - Evolution
OrthoDB400511
GeneTree (enSembl)ENSG00000224310
Phylogenetic Trees/Animal Genes : TreeFamLINC01567
HOVERGENQ6ZSR6
HOGENOMQ6ZSR6
Homologs : HomoloGeneLINC01567
Homology/Alignments : Family Browser (UCSC)LINC01567
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01567 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01567
dbVarLINC01567
ClinVarLINC01567
1000_GenomesLINC01567 
Exome Variant ServerLINC01567
ExAC (Exome Aggregation Consortium)LINC01567 (select the gene name)
Genetic variants : HAPMAP400511
Genomic Variants (DGV)LINC01567 [DGVbeta]
DECIPHERLINC01567 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01567 
Mutations
ICGC Data PortalLINC01567 
TCGA Data PortalLINC01567 
Broad Tumor PortalLINC01567
OASIS PortalLINC01567 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01567
BioMutasearch LINC01567
DgiDB (Drug Gene Interaction Database)LINC01567
DoCM (Curated mutations)LINC01567 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01567 (select a term)
intoGenLINC01567
Cancer3DLINC01567(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01567
Genetic Testing Registry LINC01567
NextProtQ6ZSR6 [Medical]
TSGene400511
GENETestsLINC01567
Target ValidationLINC01567
Huge Navigator LINC01567 [HugePedia]
snp3D : Map Gene to Disease400511
BioCentury BCIQLINC01567
ClinGenLINC01567
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400511
Clinical trialLINC01567
Miscellaneous
canSAR (ICR)LINC01567 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01567
EVEXLINC01567
GoPubMedLINC01567
iHOPLINC01567
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:59:26 CEST 2017

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